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| author | Peter Amstutz | 2020-07-03 20:45:17 +0000 |
|---|---|---|
| committer | Peter Amstutz | 2020-07-03 20:47:14 +0000 |
| commit | 535b8017ddd27a9db683f6d29368258b5c48cf5a (patch) | |
| tree | 521a3e446f0eb9cbdc6e8736a13706c8141f8351 /scripts/import_to_arvados.py | |
| parent | 841af02eaa45c1b7395d5f4e4711de3c3661c146 (diff) | |
| download | bh20-seq-resource-535b8017ddd27a9db683f6d29368258b5c48cf5a.tar.gz bh20-seq-resource-535b8017ddd27a9db683f6d29368258b5c48cf5a.tar.lz bh20-seq-resource-535b8017ddd27a9db683f6d29368258b5c48cf5a.zip | |
Improving genbank import workflow
Diffstat (limited to 'scripts/import_to_arvados.py')
| -rw-r--r-- | scripts/import_to_arvados.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/import_to_arvados.py b/scripts/import_to_arvados.py index 78cd13d..aca72d6 100644 --- a/scripts/import_to_arvados.py +++ b/scripts/import_to_arvados.py @@ -11,4 +11,4 @@ os.chdir("fasta_and_yaml") fasta_files = glob.glob("*.fasta") for f in fasta_files: - subprocess.run(["bh20-seq-uploader", f, "%s.yaml" %f[:-6]]) + subprocess.run(["bh20-seq-uploader", "%s.yaml" %f[:-6], f]) |