Merge branch 'master' of github.com:arvados/bh20-seq-resource

1 files changed, 30 insertions, 0 deletions

diff --git a/scripts/import.cwl b/scripts/import.cwl
new file mode 100644
index 0000000..d84516b
--- /dev/null
+++ b/scripts/import.cwl
@@ -0,0 +1,30 @@
+cwlVersion: v1.1
+class: CommandLineTool
+baseCommand: python3
+inputs:
+  scripts:
+    type: File
+    default:
+      class: File
+      location: import_to_arvados.py
+    inputBinding: {position: 1}
+  importScript:
+    type: File
+    default:
+      class: File
+      location: from_genbank_to_fasta_and_yaml.py
+    inputBinding: {position: 2}
+  dict:
+    type: Directory
+    default:
+      class: Directory
+      location: dict_ontology_standardization
+    inputBinding: {position: 3}
+outputs: []
+requirements:
+  DockerRequirement:
+    dockerPull: bh20-seq-uploader/import
+  NetworkAccess:
+    networkAccess: true
+  WorkReuse:
+    enableReuse: false