diff options
| author | AndreaGuarracino | 2020-11-13 22:29:10 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-13 22:29:10 +0100 |
| commit | cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079 (patch) | |
| tree | 33acc7034944498f462db3ede353a6b30b0ca2b3 /scripts/download_genbank_data | |
| parent | a5f5a85b9db5e84f3680e85b7116f324fd6d2e2e (diff) | |
| download | bh20-seq-resource-cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079.tar.gz bh20-seq-resource-cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079.tar.lz bh20-seq-resource-cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079.zip | |
generation of dates a little more robust
Diffstat (limited to 'scripts/download_genbank_data')
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 8fbacd1..1352027 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -358,7 +358,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) else: info_for_yaml_dict['sample']['additional_collection_information'] = "The 'collection_date' is estimated (the original date was: {})".format(GBQualifier_value_text) elif len(GBQualifier_value_text.split('-')) == 2: - date_to_write += '-15' + date_to_write = parse(GBQualifier_value_text).strftime('%Y-%m') + '-15' if 'additional_collection_information' in info_for_yaml_dict['sample']: info_for_yaml_dict['sample']['additional_collection_information'] += "; The 'collection_date' is estimated (the original date was: {})".format(GBQualifier_value_text) |