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authorAndreaGuarracino2020-11-12 18:35:00 +0100
committerAndreaGuarracino2020-11-12 18:35:00 +0100
commit87440554e57d5c5ed846e98a3b3ec428330e15e8 (patch)
treef5c02264faac820a91cbe92974f279f5bec10c48 /scripts/download_genbank_data
parent0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 (diff)
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updated alignment_protocol field in the script, doc, and the example templates
Diffstat (limited to 'scripts/download_genbank_data')
-rwxr-xr-xscripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 364090e..87b348b 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -190,7 +190,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
for info_to_check, field_in_yaml in zip(
['Assembly Method', 'Coverage', 'Sequencing Technology'],
- ['sequence_assembly_method', 'sequencing_coverage', 'sample_sequencing_technology']
+ ['alignment_protocol', 'sequencing_coverage', 'sample_sequencing_technology']
):
if info_to_check in GBSeq_comment_text:
tech_info_to_parse = GBSeq_comment_text.split('{} :: '.format(info_to_check))[1].split(' ;')[0]