From 87440554e57d5c5ed846e98a3b3ec428330e15e8 Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Thu, 12 Nov 2020 18:35:00 +0100 Subject: updated alignment_protocol field in the script, doc, and the example templates --- scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'scripts/download_genbank_data') diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 364090e..87b348b 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -190,7 +190,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) for info_to_check, field_in_yaml in zip( ['Assembly Method', 'Coverage', 'Sequencing Technology'], - ['sequence_assembly_method', 'sequencing_coverage', 'sample_sequencing_technology'] + ['alignment_protocol', 'sequencing_coverage', 'sample_sequencing_technology'] ): if info_to_check in GBSeq_comment_text: tech_info_to_parse = GBSeq_comment_text.split('{} :: '.format(info_to_check))[1].split(' ;')[0] -- cgit v1.2.3