From 87440554e57d5c5ed846e98a3b3ec428330e15e8 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Thu, 12 Nov 2020 18:35:00 +0100
Subject: updated alignment_protocol field in the script, doc, and the example
 templates

---
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'scripts/download_genbank_data')

diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 364090e..87b348b 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -190,7 +190,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
 
                 for info_to_check, field_in_yaml in zip(
                     ['Assembly Method', 'Coverage', 'Sequencing Technology'],
-                    ['sequence_assembly_method', 'sequencing_coverage', 'sample_sequencing_technology']
+                    ['alignment_protocol', 'sequencing_coverage', 'sample_sequencing_technology']
                 ):
                     if info_to_check in GBSeq_comment_text:
                         tech_info_to_parse = GBSeq_comment_text.split('{} :: '.format(info_to_check))[1].split(' ;')[0]
-- 
cgit v1.2.3