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| author | AndreaGuarracino | 2020-09-04 11:13:25 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-04 11:13:25 +0200 |
| commit | 327b6db4e7c9ceda190617f2a793e6a646bb30cc (patch) | |
| tree | a4e4750c85dcd4352bce415091a084fe9e64b707 /scripts/download_genbank_data | |
| parent | 1430c62ff9245bfecb1d41cc87bbafafcfc81ca3 (diff) | |
| download | bh20-seq-resource-327b6db4e7c9ceda190617f2a793e6a646bb30cc.tar.gz bh20-seq-resource-327b6db4e7c9ceda190617f2a793e6a646bb30cc.tar.lz bh20-seq-resource-327b6db4e7c9ceda190617f2a793e6a646bb30cc.zip | |
added in the sra script an option to include only a subset of ids
Diffstat (limited to 'scripts/download_genbank_data')
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 7251819..52aee4e 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -58,7 +58,8 @@ if args.ids_to_ignore: with open(args.ids_to_ignore) as f: accession_to_ignore_set.update(set([x.split('.')[0] for x in f.read().strip('\n').split('\n')])) - print('There are {} accessions to ignore.'.format(len(accession_to_ignore_set))) + + print('There are {} accessions to ignore.'.format(len(accession_to_ignore_set))) accession_already_downloaded_set = set() |