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| author | LLTommy | 2020-04-23 20:18:36 +0200 |
|---|---|---|
| committer | GitHub | 2020-04-23 20:18:36 +0200 |
| commit | 7049cd5d29acd601ccbbc9d04f001b84a51e9bd5 (patch) | |
| tree | 34a1254d81c2e526427fedb1deaa9f8441e8b260 /scripts/dict_ontology_standardization | |
| parent | f38b9c6f22b82327df9648938a5a4bcf863d8c41 (diff) | |
| parent | c7612e7eda5cd38bfbb2d293bebf732893a41b6c (diff) | |
| download | bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.tar.gz bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.tar.lz bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.zip | |
Merge branch 'master' into patch-3
Diffstat (limited to 'scripts/dict_ontology_standardization')
3 files changed, 13 insertions, 2 deletions
diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv index d5e2235..20e8a9b 100644 --- a/scripts/dict_ontology_standardization/ncbi_countries.csv +++ b/scripts/dict_ontology_standardization/ncbi_countries.csv @@ -63,6 +63,7 @@ China: Jiangxi,http://www.wikidata.org/entity/Q57052 China: Jilin,http://www.wikidata.org/entity/Q45208 China: Liaoning,http://www.wikidata.org/entity/Q43934 China: Macau,http://www.wikidata.org/entity/Q14773 +China: Nanchang,https://www.wikidata.org/wiki/Q171943 China: Ningxia Hui Autonomous Region,http://www.wikidata.org/entity/Q57448 China: Qinghai,http://www.wikidata.org/entity/Q45833 China: Shaanxi,http://www.wikidata.org/entity/Q47974 @@ -274,6 +275,7 @@ USA: IN,http://www.wikidata.org/entity/Q1415 USA: KS,http://www.wikidata.org/entity/Q1558 USA: KY,http://www.wikidata.org/entity/Q1603 USA: LA,http://www.wikidata.org/entity/Q1588 +"USA: New Orleans, LA",https://www.wikidata.org/wiki/Q34404 USA: MA,http://www.wikidata.org/entity/Q771 USA: MD,http://www.wikidata.org/entity/Q1391 USA: ME,http://www.wikidata.org/entity/Q724 diff --git a/scripts/dict_ontology_standardization/ncbi_host_health_status.csv b/scripts/dict_ontology_standardization/ncbi_host_health_status.csv new file mode 100644 index 0000000..bbb9347 --- /dev/null +++ b/scripts/dict_ontology_standardization/ncbi_host_health_status.csv @@ -0,0 +1,8 @@ +healthy,http://purl.obolibrary.org/obo/NCIT_C115935 +asymptomatic,http://purl.obolibrary.org/obo/NCIT_C3833 +sympotmatic,http://purl.obolibrary.org/obo/NCIT_C25269 +admitted to hospital,http://purl.obolibrary.org/obo/GENEPIO_0002020 +hospitalized patient,http://purl.obolibrary.org/obo/GENEPIO_0002020 +discharged from hospital,http://purl.obolibrary.org/obo/GENEPIO_0001849 +dead,http://purl.obolibrary.org/obo/NCIT_C28554 +alive,http://purl.obolibrary.org/obo/NCIT_C37987 diff --git a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv index 2905588..8278c90 100644 --- a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv +++ b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv @@ -1,4 +1,4 @@ -nasopharyngeal swab, http://purl.obolibrary.org/obo/NCIT_C155831 +nasopharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 respiratory swab,http://purl.obolibrary.org/obo/NCIT_C155831 naso-pharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 @@ -22,4 +22,5 @@ bronchoalveolar lavage,http://purl.obolibrary.org/obo/NCIT_C13195 sputum,http://purl.obolibrary.org/obo/NCIT_C13278 aspirate,http://purl.obolibrary.org/obo/NCIT_C13347 stool,http://purl.obolibrary.org/obo/NCIT_C13234 -serum,http://purl.obolibrary.org/obo/NCIT_C13325
\ No newline at end of file +serum,http://purl.obolibrary.org/obo/NCIT_C13325 +saliva,http://purl.obolibrary.org/obo/NCIT_C13275 |