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| author | Pjotr Prins | 2020-05-06 09:03:08 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-05-06 09:03:08 -0500 |
| commit | 0031e778ee1ad8b934411da5082fcb3115646e67 (patch) | |
| tree | be17fb9aff6351e967a9210cd4c58a60ad55a382 /scripts/dict_ontology_standardization | |
| parent | 7d7af6cde75d09da7a05cf5bc05ef2556c3aea92 (diff) | |
| parent | b6d846b5de6c67b28adab1fa520953115a1a1e30 (diff) | |
| download | bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.tar.gz bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.tar.lz bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.zip | |
Merge branch 'master' of github.com:arvados/bh20-seq-resource
Diffstat (limited to 'scripts/dict_ontology_standardization')
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_countries.csv | 9 | ||||
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_speciesman_source.csv | 1 |
2 files changed, 9 insertions, 1 deletions
diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv index 20e8a9b..6b43137 100644 --- a/scripts/dict_ontology_standardization/ncbi_countries.csv +++ b/scripts/dict_ontology_standardization/ncbi_countries.csv @@ -39,6 +39,7 @@ Chad,http://www.wikidata.org/entity/Q657 Chile,http://www.wikidata.org/entity/Q298 China,http://www.wikidata.org/entity/Q148 China: Anhui,http://www.wikidata.org/entity/Q40956 +"China: Anhui, Fuyang":http://www.wikidata.org/entity/Q360584 China: Beijing,http://www.wikidata.org/entity/Q956 China: Chongqing,http://www.wikidata.org/entity/Q11725 China: Fujian,http://www.wikidata.org/entity/Q41705 @@ -48,6 +49,7 @@ China: Guangdong,http://www.wikidata.org/entity/Q15175 China: Guangxi Zhuang Autonomous Region,http://www.wikidata.org/entity/Q15176 China: Guangzhou,http://www.wikidata.org/entity/Q16572 China: Guizhou,http://www.wikidata.org/entity/Q47097 +China: Hangzhou,http://www.wikidata.org/entity/Q4970 China: Hainan,http://www.wikidata.org/entity/Q42200 China: Hebei,http://www.wikidata.org/entity/Q21208 China: Heilongjiang,http://www.wikidata.org/entity/Q19206 @@ -109,6 +111,7 @@ France,http://www.wikidata.org/entity/Q142 Gabon,http://www.wikidata.org/entity/Q1000 Georgia,http://www.wikidata.org/entity/Q230 Germany,http://www.wikidata.org/entity/Q183 +Germany: Dusseldorf,https://www.wikidata.org/wiki/Q1718 Ghana,http://www.wikidata.org/entity/Q117 Greece,http://www.wikidata.org/entity/Q41 Grenada,http://www.wikidata.org/entity/Q769 @@ -123,6 +126,7 @@ Iceland,http://www.wikidata.org/entity/Q189 Icelandic Commonwealth,http://www.wikidata.org/entity/Q62389 India,http://www.wikidata.org/entity/Q668 India: Kerala State,http://www.wikidata.org/entity/Q1186 +India: Rajkot,http://www.wikidata.org/entity/Q1815245 Indonesia,http://www.wikidata.org/entity/Q252 Iran,http://www.wikidata.org/entity/Q794 Iran: Qum,http://www.wikidata.org/entity/Q131664 @@ -172,6 +176,7 @@ Mozambique,http://www.wikidata.org/entity/Q1029 Myanmar,http://www.wikidata.org/entity/Q836 Namibia,http://www.wikidata.org/entity/Q1030 Nauru,http://www.wikidata.org/entity/Q697 +Netherlands: Milheeze,https://www.wikidata.org/wiki/Q3314115 Nepal,http://www.wikidata.org/entity/Q837 New Zealand,http://www.wikidata.org/entity/Q664 Nicaragua,http://www.wikidata.org/entity/Q811 @@ -263,6 +268,7 @@ USA: CA,http://www.wikidata.org/entity/Q99 "USA: CA, San Diego County",http://www.wikidata.org/entity/Q108143 USA: CO,http://www.wikidata.org/entity/Q1261 USA: CT,http://www.wikidata.org/entity/Q779 +USA: DC,http://www.wikidata.org/entity/Q3551781 USA: DE,http://www.wikidata.org/entity/Q1393 USA: FL,http://www.wikidata.org/entity/Q812 USA: GA,http://www.wikidata.org/entity/Q1428 @@ -293,6 +299,7 @@ USA: NM,http://www.wikidata.org/entity/Q1522 USA: North Carolina,http://www.wikidata.org/entity/Q1454 USA: NV,http://www.wikidata.org/entity/Q1227 USA: NY,http://www.wikidata.org/entity/Q1384 +USA: New York,http://www.wikidata.org/entity/Q1384 USA: OH,http://www.wikidata.org/entity/Q1397 USA: OK,http://www.wikidata.org/entity/Q1649 USA: OR,http://www.wikidata.org/entity/Q824 @@ -321,4 +328,4 @@ Viet Nam: Ho Chi Minh city,http://www.wikidata.org/entity/Q1854 Vietnam,http://www.wikidata.org/entity/Q881 Yemen,http://www.wikidata.org/entity/Q805 Zambia,http://www.wikidata.org/entity/Q953 -Zimbabwe,http://www.wikidata.org/entity/Q954 +Zimbabwe,http://www.wikidata.org/entity/Q954
\ No newline at end of file diff --git a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv index f5aeaae..7fa67f8 100644 --- a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv +++ b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv @@ -1,5 +1,6 @@ nasopharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 +nasopharyngeal,http://purl.obolibrary.org/obo/NCIT_C155831 respiratory swab,http://purl.obolibrary.org/obo/NCIT_C155831 naso-pharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal aspirate,http://purl.obolibrary.org/obo/NCIT_C155831 |