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| author | AndreaGuarracino | 2020-11-13 22:41:47 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-13 22:41:47 +0100 |
| commit | 0d7f1bc0000df215e85f0da1143703e311328dea (patch) | |
| tree | 2615907b92ca783512209cfa7eef629de4fc9ce3 /scripts/create_sra_metadata | |
| parent | cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079 (diff) | |
| download | bh20-seq-resource-0d7f1bc0000df215e85f0da1143703e311328dea.tar.gz bh20-seq-resource-0d7f1bc0000df215e85f0da1143703e311328dea.tar.lz bh20-seq-resource-0d7f1bc0000df215e85f0da1143703e311328dea.zip | |
fix check date sra script
Diffstat (limited to 'scripts/create_sra_metadata')
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index 85d4e9e..f5dc0c8 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -290,10 +290,10 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): year, month, day = [int(x) for x in info_for_yaml_dict['sample']['collection_date'].split('-')] collection_date_in_yaml = datetime(year, month, day) - - if accession not in not_created_accession_dict: - not_created_accession_dict[accession] = [] - not_created_accession_dict[accession].append('collection_date too early') + if collection_date_in_yaml < min_acceptable_collection_date: + if accession not in not_created_accession_dict: + not_created_accession_dict[accession] = [] + not_created_accession_dict[accession].append('collection_date too early') if 'sample_sequencing_technology' not in info_for_yaml_dict['technology']: # print(accession_version, ' - technology not found') |