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| author | Pjotr Prins | 2020-12-24 09:15:39 +0000 |
|---|---|---|
| committer | GitHub | 2020-12-24 09:15:39 +0000 |
| commit | df0421757e464f07b5e96b5444f1926784e7400f (patch) | |
| tree | f9a9a262bb2d95a89a6ec1c96b98a2b166fb92b5 /scripts/create_sra_metadata | |
| parent | 00ba74b163f723bb7283624171f0c7c203dc99e5 (diff) | |
| parent | bfd830f9d777c456409958030142155043ec1c68 (diff) | |
| download | bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.tar.gz bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.tar.lz bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.zip | |
Merge pull request #117 from arvados/pangenome_workflow_abpoa
Pangenome workflow with abPOA
Diffstat (limited to 'scripts/create_sra_metadata')
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index eebd9aa..35f61a5 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -232,7 +232,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): taxon_id = SAMPLE.find('SAMPLE_NAME').find('TAXON_ID').text info_for_yaml_dict['virus']['virus_species'] = "http://purl.obolibrary.org/obo/NCBITaxon_" + taxon_id - # This script download and prepare data and metadata for samples that will be mapepd againg a referenceT + # This script download and prepare data and metadata for samples that will be mapped against a referenceT info_for_yaml_dict['technology']['assembly_method'] = 'http://purl.obolibrary.org/obo/GENEPIO_0002028' EXPERIMENT = EXPERIMENT_PACKAGE.find('EXPERIMENT') |