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| author | AndreaGuarracino | 2020-09-04 12:34:54 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-04 12:34:54 +0200 |
| commit | c754aab95f47317228a07ccbe3818780aa22a52a (patch) | |
| tree | c6c067f20d41eb8259e04c8709569d05f7ff6f5b /scripts/create_sra_metadata | |
| parent | 8417375cd86c6ba2f29511964544a267ed883ccd (diff) | |
| download | bh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.tar.gz bh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.tar.lz bh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.zip | |
fixed bugs in in index management and type conversion
Diffstat (limited to 'scripts/create_sra_metadata')
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index 8866d01..b872896 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -198,7 +198,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): missing_value_list.append('\t'.join([accession, 'host_sex', VALUE_text])) elif TAG_text in ['host_age', 'host age']: if is_integer(VALUE_text): - info_for_yaml_dict['host']['host_age'] = VALUE_text + info_for_yaml_dict['host']['host_age'] = int(VALUE_text) info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036' elif TAG_text == 'collected_by': if VALUE_text.lower() not in ['not available', 'missing']: |