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| author | AndreaGuarracino | 2020-11-15 11:49:12 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-15 11:49:12 +0100 |
| commit | 7fc06d04a04a1737ae8b52f2e08c6698a8e5c721 (patch) | |
| tree | e1b539207aae272bc12895efb50a698d1c2eef3a /scripts/create_sra_metadata/create_sra_metadata.py | |
| parent | 72e77fda220e939676d10fd8505fd15517e99702 (diff) | |
| download | bh20-seq-resource-7fc06d04a04a1737ae8b52f2e08c6698a8e5c721.tar.gz bh20-seq-resource-7fc06d04a04a1737ae8b52f2e08c6698a8e5c721.tar.lz bh20-seq-resource-7fc06d04a04a1737ae8b52f2e08c6698a8e5c721.zip | |
fixed typos in the integer cast
Diffstat (limited to 'scripts/create_sra_metadata/create_sra_metadata.py')
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index 83a1a60..eebd9aa 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -178,7 +178,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): missing_value_list.append('\t'.join([accession, 'host_sex', VALUE_text])) elif TAG_text in ['host_age', 'host age']: if is_integer(VALUE_text): - host_age = is_integer(VALUE_text) + host_age = int(VALUE_text) if host_age >= 0 and host_age < 110: info_for_yaml_dict['host']['host_age'] = host_age info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036' |