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| author | LLTommy | 2020-06-24 08:45:07 +0200 |
|---|---|---|
| committer | GitHub | 2020-06-24 08:45:07 +0200 |
| commit | 73ac4b91a44779a54c77e29ba1e8ee52291e390e (patch) | |
| tree | b90d3576b3f54e19c0d07156f7b69abb0e12fba4 /scripts/README.md | |
| parent | b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b (diff) | |
| parent | 2d822c049f2b7f3e62a3ac4c19c827428b6f73e2 (diff) | |
| download | bh20-seq-resource-73ac4b91a44779a54c77e29ba1e8ee52291e390e.tar.gz bh20-seq-resource-73ac4b91a44779a54c77e29ba1e8ee52291e390e.tar.lz bh20-seq-resource-73ac4b91a44779a54c77e29ba1e8ee52291e390e.zip | |
Merge pull request #87 from AndreaGuarracino/patch-20
added script to crete metadata for SRA data; new dictionary entries; little directory changes
Diffstat (limited to 'scripts/README.md')
| -rw-r--r-- | scripts/README.md | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/scripts/README.md b/scripts/README.md new file mode 100644 index 0000000..a3ed1b6 --- /dev/null +++ b/scripts/README.md @@ -0,0 +1,6 @@ +### Instructions for download and/or prepare the data and/ or the metadata + +Just go into the `download_genbank_data` or `download_sra_data` directory and execute the python3 script inside. + +- `download_genbank_data/from_genbank_to_fasta_and_yaml.py` downloads the data and the matadata, preparing the FASTA and the YAML files; +- `download_sra_data/download_sra_data.py` creates the metadata in the form of YAML files from the SraExperimentPackage.XXX.xml.gz file in the same directory. |