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author | Pjotr Prins | 2020-04-08 11:53:21 -0500 |
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committer | Pjotr Prins | 2020-04-08 11:53:21 -0500 |
commit | 5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb (patch) | |
tree | 2351be61d129b69e862be9fa5abb0f9f6594062d /paper | |
parent | 6c8859d96cc13f5d1a8b38253b046be286c8b818 (diff) | |
download | bh20-seq-resource-5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb.tar.gz bh20-seq-resource-5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb.tar.lz bh20-seq-resource-5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb.zip |
Paper
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-rw-r--r-- | paper/paper.md | 109 |
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diff --git a/paper/paper.bib b/paper/paper.bib new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/paper/paper.bib diff --git a/paper/paper.md b/paper/paper.md new file mode 100644 index 0000000..8942d01 --- /dev/null +++ b/paper/paper.md @@ -0,0 +1,109 @@ +--- +title: 'Logic Programming Working Group' +tags: + - logic programming +authors: + - name: Pjotr Prins + orcid: 0000-0002-8021-9162 + affiliation: 1 + - name: Peter Amstutz + orcid: 0000 + affiliation: 2 + - name: Tazro Ohta + orcid: 0000 + affiliation: 3 + - name: Thomas Liener + orcid: 0000 + affiliation: 4 + - name: Erik Garrison + orcid: 0000 + affiliation: 5 + - name: Michael Crusoe + orcid: 0000 + affiliation: 6 + - name: Rutger Vos + orcid: 0000 + affiliation: 7 + - Michael Heuer + orcid: 0000 + affiliation: 8 + +affiliations: + - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA. + index: 1 + - name: Curii, Boston, USA + index: 2 +date: 11 April 2020 +bibliography: paper.bib +--- + +<!-- + +The paper.md, bibtex and figure file can be found in this repo: + + https://github.com/arvados/bh20-seq-resource + +To modify, please clone the repo. You can generate PDF of the paper by +pasting above link (or yours) with + + https://github.com/biohackrxiv/bhxiv-gen-pdf + +--> + +# Introduction + +As part of the one week COVID-19 Biohackathion 2020, we formed a +working group on creating a public sequence resource for Corona virus. + + +<!-- + + RESULTS! + + For each section below + + State the problem you worked on + Give the state-of-the art/plan + Describe what you have done/results starting with The working group created... + Write a conclusion + Write up any future work + +--> + +## Cloud computing backend + +Peter, Pjotr, MichaelC + +## A command-line sequence uploader + +Peter, Pjotr + +## Metadata uploader + +With Thomas + +## FASTA to GFA workflow + +Michael Heuer + +## BAM to GFA workflow + +Tazro & Erik + +## Phylogeny app + +With Rutger + +## RDF app + +Jerven? + +## EBI app + +? + +# Discussion + +Future work... + +# References |