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authorLLTommy2020-04-22 19:33:23 +0200
committerGitHub2020-04-22 19:33:23 +0200
commit5db065bd3187622135b1184e34b7b3f29d9c881a (patch)
treeb1b0557a979ca6d77421f2ec97dd69df7202c586 /example
parentce696b41b3476891ecb05185d64c289b140a73af (diff)
parent53ec1c771fea5066abc83acb54859bfa3048a606 (diff)
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Merge pull request #31 from DCGenomics/patch-1
Update metadata.yaml
Diffstat (limited to 'example')
-rw-r--r--example/metadata.yaml18
1 files changed, 9 insertions, 9 deletions
diff --git a/example/metadata.yaml b/example/metadata.yaml
index 1e83400..57d90b5 100644
--- a/example/metadata.yaml
+++ b/example/metadata.yaml
@@ -6,15 +6,15 @@ host:
host_sex: http://purl.obolibrary.org/obo/NCIT_C27993
host_age: 20
host_age_unit: http://purl.obolibrary.org/obo/UO_0000036
- host_health_status: A condition or state at a particular time
- host_treatment: Process in which the act is intended to modify or alter host status
- host_vaccination: List of vaccines given to the host
+ host_health_status: A condition or state at a particular time (Disease ontology)
+ host_treatment: Process in which the act is intended to modify or alter host status (Compounds)
+ host_vaccination: List of vaccines given to the host (RRIDs?)
additional_host_information: Field for additional host information
sample:
- sample_id: Id of the sample as defined by the submitter
+ sample_id: Id of the sample as defined by the submitter
collector_name: Name of the person that took the sample
- collecting_institution: Institute that was responsible of sampeling
+ collecting_institution: Institute that was responsible of sampling
specimen_source: http://purl.obolibrary.org/obo/NCIT_C155831
specimen_source2: http://purl.obolibrary.org/obo/NCIT_C155835
collection_date: "2020-01-01"
@@ -29,15 +29,15 @@ virus:
technology:
sample_sequencing_technology: http://www.ebi.ac.uk/efo/EFO_0009173
sample_sequencing_technology2: http://www.ebi.ac.uk/efo/EFO_0009173
- sequence_assembly_method: Protocol used for assembly
+ sequence_assembly_method: Protocol used for assembly (CWL, WDL, NF, BCO?)
sequencing_coverage: 70
submitter:
- submitter_name: John Doe
+ submitter_name: John Doe (ORCID?)
submitter_address: John Doe's adress
originating_lab: John Doe kitchen
- lab_address: John Doe's adress
+ lab_address: John Doe's address
provider_sample_id: HmX
submitter_sample_id: xXx
authors: John Doe et all
- submitter_orcid: https://orcid.org/0000-0000-0000-0000
+ submitter_orcid: https://orcid.org/0000-0000-0000-0000 (if this is here, others can be optional?)