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authorPjotr Prins2020-10-26 08:01:13 +0000
committerPjotr Prins2020-10-26 09:00:39 +0000
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Adding upload metadata examples
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+id: placeholder
+
+license:
+ license_type: http://creativecommons.org/licenses/by/4.0/
+ title: "SARS-CoV-2 New Zealand"
+ attribution_name: "ESR"
+ attribution_url: https://www.esr.cri.nz/
+
+host:
+ host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
+ additional_host_information: Optional free text field for additional information
+
+sample:
+ sample_id: "20VR0174"
+ collection_date: "2020-02-26"
+ collection_location: https://www.wikidata.org/wiki/Q37100
+ specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831]
+ source_database_accession: [http://identifiers.org/insdc/LC522350.1#sequence] ??
+ additional_collection_information: Optional free text field for additional information
+
+virus:
+ virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
+ virus_strain: SARS-CoV-2/human/CHN/HS_8/2020
+
+technology:
+ sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION
+ sequence_assembly_method: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics
+ additional_technology_information: "Artic V3 workflow"
+
+submitter:
+ authors: [Jemma L Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fabio K Mendes, Andrew Sporle, Michael G Baker, David R Murdoch, Nigel French, Colin R Simpson, David Welch, Alexei J Drummond, Edward C Holmes, Sebastian Duchene, Joep de Ligt]
+ submitter_name: [Joep de Ligt]
+ submitter_address: "PO Box 50348, Porirua 5240, New Zealand"
+ originating_lab: ESR
+ provider_sample_id: "20VR0174"
+ submitter_sample_id: "PRJNA648792"
+ submitted_to: https://www.ncbi.nlm.nih.gov/biosample
+ publication: https://doi.org/10.1101/2020.08.05.20168930
+ public_date: "2020-08-20"
+ submitter_orcid: [https://orcid.org/0000-0003-0970-0153]
+ additional_submitter_information: Optional free text field for additional information