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author | Pjotr Prins | 2020-08-23 10:41:03 +0100 |
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committer | Pjotr Prins | 2020-08-23 10:41:03 +0100 |
commit | bf6d73b68ab685ff4ad18ca883171e0fef40bc87 (patch) | |
tree | 37024690170beb1b95522c3897b64ce78a25a048 /doc/web/about.org | |
parent | 246c516e4a8c98394c695dcb446995319d557e01 (diff) | |
download | bh20-seq-resource-bf6d73b68ab685ff4ad18ca883171e0fef40bc87.tar.gz bh20-seq-resource-bf6d73b68ab685ff4ad18ca883171e0fef40bc87.tar.lz bh20-seq-resource-bf6d73b68ab685ff4ad18ca883171e0fef40bc87.zip |
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-rw-r--r-- | doc/web/about.org | 37 |
1 files changed, 33 insertions, 4 deletions
diff --git a/doc/web/about.org b/doc/web/about.org index efd914f..1b7bda1 100644 --- a/doc/web/about.org +++ b/doc/web/about.org @@ -27,10 +27,39 @@ * What is the 'public sequence resource' about? -The *public sequence resource* aims to provide a generic and useful -resource for COVID-19 research. The focus is on providing the best -possible sequence data with associated metadata that can be used for -sequence comparison and protein prediction. +PubSeq, the *public sequence resource*, aims to provide a generic and +useful resource for COVID-19 research. The focus is on providing the +best possible sequence data with associated metadata that can be used +for sequence comparison and protein prediction. + +Just to avoid the notion that PubSeq is a biorepository: it is far +more than that. We are not competing with the likes of GenBank, +EBI/ENA and GISAID - in fact, PubSeq sources much of the data from +those and they get ours. + +There is no conflict of posting data to multiple repositories. + +It is better to view PubSeq as an *open precision medicine initiative* that +allows for early detection of new variants and strains; very valuable +for both testing and treatment. We have live analysis work flows that +run on uploading a new sequence. Contributing sequences helps the +overall detection. At this moment the output is limited. We will soon +add interactive discovery tools. Uploading data from a sequencer will +give researchers all information they want in 5 hours *without any +bioinformatics knowledge*. We may even provide workflows that take +data straight from the sequencer. In fact, you get very little out of +existing biorepositories, in our opinion, unless you have solid +bioinformatics support. And even then there is the question about +comparing data that was created using different technologies and +workflows. How do you deal with that? + +With PubSeq we are in a position to reanalyse that data from raw +material when new insights arise. It is likely that COVID19 will be +around for another year at least. After that we should prepare for +the next pandemic. PubSeq is meant for that. We take the long view and +it will only get more powerful. Who knows: maybe the live analysis +part of PubSeq will be an approach that other biorepositories will +follow. * Presentations |