diff options
author | Pjotr Prins | 2020-05-27 07:36:27 -0500 |
---|---|---|
committer | Pjotr Prins | 2020-05-27 07:36:27 -0500 |
commit | e5f0990f97b8316ea618f0831b6858dde92afaed (patch) | |
tree | c4e5292e0e9fc78a3c1c275b3429b5c34bff5fbe /doc/blog/using-covid-19-pubseq-part2.org | |
parent | 20da90784ad30b51549407dd4f390254c415ee6b (diff) | |
download | bh20-seq-resource-e5f0990f97b8316ea618f0831b6858dde92afaed.tar.gz bh20-seq-resource-e5f0990f97b8316ea618f0831b6858dde92afaed.tar.lz bh20-seq-resource-e5f0990f97b8316ea618f0831b6858dde92afaed.zip |
Wiring up blog entries
Diffstat (limited to 'doc/blog/using-covid-19-pubseq-part2.org')
-rw-r--r-- | doc/blog/using-covid-19-pubseq-part2.org | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part2.org b/doc/blog/using-covid-19-pubseq-part2.org index d61bf42..d2a1cbc 100644 --- a/doc/blog/using-covid-19-pubseq-part2.org +++ b/doc/blog/using-covid-19-pubseq-part2.org @@ -8,6 +8,22 @@ #+HTML_LINK_HOME: http://covid19.genenetwork.org #+HTML_HEAD: <link rel="Blog stylesheet" type="text/css" href="blog.css" /> +As part of the COVID-19 Biohackathon 2020 we formed a working group to +create a COVID-19 Public Sequence Resource (COVID-19 PubSeq) for +Corona virus sequences. The general idea is to create a repository +that has a low barrier to entry for uploading sequence data using best +practices. I.e., data published with a creative commons 4.0 (CC-4.0) +license with metadata using state-of-the art standards and, perhaps +most importantly, providing standardised workflows that get triggered +on upload, so that results are immediately available in standardised +data formats. + +* Table of Contents :TOC:noexport: + - [[#finding-output-of-workflows][Finding output of workflows]] + - [[#introduction][Introduction]] + - [[#the-arvados-file-interface][The Arvados file interface]] + - [[#using-the-arvados-api][Using the Arvados API]] + * Finding output of workflows As part of the COVID-19 Biohackathon 2020 we formed a working group to |