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authorPjotr Prins2020-07-15 11:37:19 +0100
committerPjotr Prins2020-07-15 14:17:27 +0100
commitf44d555b788e29a1896a69d75401f0e145ad9299 (patch)
tree410b2e7ef4746c89f5929f07543dc9024327b7fb /doc/INSTALL.md
parenta0c8ebd57b875f265e8b0efec4abfaf892eb6c45 (diff)
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Update Guix install
Diffstat (limited to 'doc/INSTALL.md')
-rw-r--r--doc/INSTALL.md6
1 files changed, 3 insertions, 3 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md
index 6dcd72b..3b270dd 100644
--- a/doc/INSTALL.md
+++ b/doc/INSTALL.md
@@ -42,7 +42,7 @@ repository.
### Using the Web Uploader
-To run the web uploader in a GNU Guix environment/container
+To run the web uploader in a GNU Guix environment/container run it with something like
```
guix environment guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs --network openssl -- env FLASK_ENV=development PYTHONPATH=$PYTHONPATH:./bh20sequploader FLASK_APP=bh20simplewebuploader/main.py flask run
@@ -59,7 +59,7 @@ WIP: add gunicorn container
Currently the full webserver container deploy command looks like
```
-penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-bioinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
-``
+penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
+```
Note: see above on GUIX_PACKAGE_PATH.