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| author | Pjotr Prins | 2020-07-17 11:08:15 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-07-17 11:08:15 +0100 |
| commit | 16bb5df907c79cd0ce6bea0015821a2ce51fb992 (patch) | |
| tree | ddb9677cddcc463bb514300189cbd4300b9117ed /doc/INSTALL.md | |
| parent | 0be9983ef88fd3b925d8fa53e7f9ab2a28703bc0 (diff) | |
| parent | c69046ee9a5e24eadcd8cb885633328b0fd88011 (diff) | |
| download | bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.tar.gz bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.tar.lz bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.zip | |
Merge branch 'master' into ebi-submit
Diffstat (limited to 'doc/INSTALL.md')
| -rw-r--r-- | doc/INSTALL.md | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md index 6dcd72b..3b270dd 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -42,7 +42,7 @@ repository. ### Using the Web Uploader -To run the web uploader in a GNU Guix environment/container +To run the web uploader in a GNU Guix environment/container run it with something like ``` guix environment guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs --network openssl -- env FLASK_ENV=development PYTHONPATH=$PYTHONPATH:./bh20sequploader FLASK_APP=bh20simplewebuploader/main.py flask run @@ -59,7 +59,7 @@ WIP: add gunicorn container Currently the full webserver container deploy command looks like ``` -penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-bioinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run -`` +penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run +``` Note: see above on GUIX_PACKAGE_PATH. |