aboutsummaryrefslogtreecommitdiff
path: root/bh20simplewebuploader
diff options
context:
space:
mode:
authorlltommy2020-05-15 18:14:48 +0200
committerlltommy2020-05-15 18:14:48 +0200
commitef4a0fa67ca6e2b695f8a09a1f6d1d810ee5dff0 (patch)
tree9c83181420daa26ac2d7ae56044f0d44fa9ad076 /bh20simplewebuploader
parent0afebfd4b6ba68d8be8b205f56d373b858544e76 (diff)
downloadbh20-seq-resource-ef4a0fa67ca6e2b695f8a09a1f6d1d810ee5dff0.tar.gz
bh20-seq-resource-ef4a0fa67ca6e2b695f8a09a1f6d1d810ee5dff0.tar.lz
bh20-seq-resource-ef4a0fa67ca6e2b695f8a09a1f6d1d810ee5dff0.zip
Adding labels to getDetails endpoint
Diffstat (limited to 'bh20simplewebuploader')
-rw-r--r--bh20simplewebuploader/main.py19
1 files changed, 5 insertions, 14 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py
index 865af97..1dff207 100644
--- a/bh20simplewebuploader/main.py
+++ b/bh20simplewebuploader/main.py
@@ -439,12 +439,15 @@ def getAllaccessions():
@app.route('/api/getDetailsForSeq', methods=['GET'])
def getDetailsForSeq():
seq_id = request.args.get('seq')
- query="""SELECT DISTINCT ?key ?value WHERE {<placeholder> ?x [?key ?value]}"""
+ query="""SELECT DISTINCT ?key ?key_label ?value WHERE {
+ <http://arvados.org/keep:00a6af865453564f6a59b3d2c81cc7c1+123/sequence.fasta> ?x [?key ?value] .
+ OPTIONAL {?key <http://www.w3.org/2000/01/rdf-schema#label> ?key_tmp_label } .
+ BIND(IF(BOUND(?key_tmp_label),?key_tmp_label, ?key) as ?key_label)}"""
query=query.replace("placeholder", seq_id)
payload = {'query': query, 'format': 'json'}
r = requests.get(baseURL, params=payload)
result = r.json()['results']['bindings']
- return jsonify([{'uri': x['key']['value'],
+ return jsonify([{'uri': x['key']['value'], 'key_label': x['key_label']['value'],
'value': x['value']['value']} for x in result])
@@ -463,18 +466,6 @@ def getSEQCountbytech():
'tech': x['tech']['value'],
'Label': x['tech_label']['value']} for x in result])
-## Is this one really necessary or should we just use getSEQCountbytech instead?
-@app.route('/api/getAvailableTech', methods=['GET'])
-def getAvailableTech():
- query="""SELECT distinct ?tech ?tech_label WHERE
- {?fasta ?x [<http://purl.obolibrary.org/obo/OBI_0600047> ?tech]
- BIND (concat(?tech,"_label") as ?tech_label)
- } """
- payload = {'query': query, 'format': 'json'}
- r = requests.get(baseURL, params=payload)
- result = r.json()['results']['bindings']
- return str(result)
-
## List all Sequences/submissions by a given tech, as example e.g. http://purl.obolibrary.org/obo/OBI_0000759
## Has to be encoded again so should be --> http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000759
@app.route('/api/getSEQbytech', methods=['GET'])