Display About/FAQ

author: Pjotr Prins 2020-05-24 10:31:24 -0500
committer: Pjotr Prins 2020-05-24 10:31:24 -0500
commit: c3bbd48601cdb4bec510db72bd2296724874f4f3 (patch)
tree: b61ca5b473cc30aa971264994697c70c06f20c56 /bh20simplewebuploader/templates
parent: a3c37de9105a784a8f73d3925269c847108baa17 (diff)
download: bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.tar.gz
bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.tar.lz
bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.zip
3 files changed, 296 insertions, 3 deletions
diff --git a/bh20simplewebuploader/templates/about.html b/bh20simplewebuploader/templates/about.html
index 286a211..07b6951 100644
--- a/bh20simplewebuploader/templates/about.html
+++ b/bh20simplewebuploader/templates/about.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
 <html>
-  {% include 'header.html' %}
+  {% include 'org-header.html' %}
     <body>
       {% include 'banner.html' %}
       {% include 'menu.html' %}
 
-      WIP
+      {{ embed|safe }}
 
       {% include 'footer.html' %}
 
diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html
index b1bbad2..3a1b03b 100644
--- a/bh20simplewebuploader/templates/form.html
+++ b/bh20simplewebuploader/templates/form.html
@@ -12,7 +12,7 @@
                         Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">public sequence resource</a>. The upload will trigger a
                         recompute with all available sequences into a Pangenome
                         available for
-                        <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">download</a>!
+                        <a href="https://collections.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/">download</a>!
                     </p>
                     <p>
                         Your uploaded sequence will automatically be processed
diff --git a/bh20simplewebuploader/templates/org-header.html b/bh20simplewebuploader/templates/org-header.html
new file mode 100644
index 0000000..915bcb7
--- /dev/null
+++ b/bh20simplewebuploader/templates/org-header.html
@@ -0,0 +1,293 @@
+<head>
+  <link href="https://fonts.googleapis.com/css2?family=Inter:wght@100;200;300;400;500;600;700;800;900&display=swap" rel="stylesheet">
+  <link href="/static/main.css" rel="stylesheet" type="text/css">
+  <meta name="viewport" content="width=device-width, initial-scale=1">
+  <title>Web uploader for Public SARS-CoV-2 Sequence Resource</title>
+  <script type="text/javascript" src="/static/main.js"></script>
+<!-- 2020-05-24 Sun 08:10 -->
+<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
+<meta name="viewport" content="width=device-width, initial-scale=1" />
+<meta name="generator" content="Org mode" />
+<meta name="author" content="Pjotr Prins" />
+<style type="text/css">
+ <!--/*--><![CDATA[/*><!--*/
+  .title  { text-align: center;
+             margin-bottom: .2em; }
+  .subtitle { text-align: center;
+              font-size: medium;
+              font-weight: bold;
+              margin-top:0; }
+  .todo   { font-family: monospace; color: red; }
+  .done   { font-family: monospace; color: green; }
+  .priority { font-family: monospace; color: orange; }
+  .tag    { background-color: #eee; font-family: monospace;
+            padding: 2px; font-size: 80%; font-weight: normal; }
+  .timestamp { color: #bebebe; }
+  .timestamp-kwd { color: #5f9ea0; }
+  .org-right  { margin-left: auto; margin-right: 0px;  text-align: right; }
+  .org-left   { margin-left: 0px;  margin-right: auto; text-align: left; }
+  .org-center { margin-left: auto; margin-right: auto; text-align: center; }
+  .underline { text-decoration: underline; }
+  #postamble p, #preamble p { font-size: 90%; margin: .2em; }
+  p.verse { margin-left: 3%; }
+  pre {
+    border: 1px solid #ccc;
+    box-shadow: 3px 3px 3px #eee;
+    padding: 8pt;
+    font-family: monospace;
+    overflow: auto;
+    margin: 1.2em;
+  }
+  pre.src {
+    position: relative;
+    overflow: visible;
+    padding-top: 1.2em;
+  }
+  pre.src:before {
+    display: none;
+    position: absolute;
+    background-color: white;
+    top: -10px;
+    right: 10px;
+    padding: 3px;
+    border: 1px solid black;
+  }
+  pre.src:hover:before { display: inline;}
+  /* Languages per Org manual */
+  pre.src-asymptote:before { content: 'Asymptote'; }
+  pre.src-awk:before { content: 'Awk'; }
+  pre.src-C:before { content: 'C'; }
+  /* pre.src-C++ doesn't work in CSS */
+  pre.src-clojure:before { content: 'Clojure'; }
+  pre.src-css:before { content: 'CSS'; }
+  pre.src-D:before { content: 'D'; }
+  pre.src-ditaa:before { content: 'ditaa'; }
+  pre.src-dot:before { content: 'Graphviz'; }
+  pre.src-calc:before { content: 'Emacs Calc'; }
+  pre.src-emacs-lisp:before { content: 'Emacs Lisp'; }
+  pre.src-fortran:before { content: 'Fortran'; }
+  pre.src-gnuplot:before { content: 'gnuplot'; }
+  pre.src-haskell:before { content: 'Haskell'; }
+  pre.src-hledger:before { content: 'hledger'; }
+  pre.src-java:before { content: 'Java'; }
+  pre.src-js:before { content: 'Javascript'; }
+  pre.src-latex:before { content: 'LaTeX'; }
+  pre.src-ledger:before { content: 'Ledger'; }
+  pre.src-lisp:before { content: 'Lisp'; }
+  pre.src-lilypond:before { content: 'Lilypond'; }
+  pre.src-lua:before { content: 'Lua'; }
+  pre.src-matlab:before { content: 'MATLAB'; }
+  pre.src-mscgen:before { content: 'Mscgen'; }
+  pre.src-ocaml:before { content: 'Objective Caml'; }
+  pre.src-octave:before { content: 'Octave'; }
+  pre.src-org:before { content: 'Org mode'; }
+  pre.src-oz:before { content: 'OZ'; }
+  pre.src-plantuml:before { content: 'Plantuml'; }
+  pre.src-processing:before { content: 'Processing.js'; }
+  pre.src-python:before { content: 'Python'; }
+  pre.src-R:before { content: 'R'; }
+  pre.src-ruby:before { content: 'Ruby'; }
+  pre.src-sass:before { content: 'Sass'; }
+  pre.src-scheme:before { content: 'Scheme'; }
+  pre.src-screen:before { content: 'Gnu Screen'; }
+  pre.src-sed:before { content: 'Sed'; }
+  pre.src-sh:before { content: 'shell'; }
+  pre.src-sql:before { content: 'SQL'; }
+  pre.src-sqlite:before { content: 'SQLite'; }
+  /* additional languages in org.el's org-babel-load-languages alist */
+  pre.src-forth:before { content: 'Forth'; }
+  pre.src-io:before { content: 'IO'; }
+  pre.src-J:before { content: 'J'; }
+  pre.src-makefile:before { content: 'Makefile'; }
+  pre.src-maxima:before { content: 'Maxima'; }
+  pre.src-perl:before { content: 'Perl'; }
+  pre.src-picolisp:before { content: 'Pico Lisp'; }
+  pre.src-scala:before { content: 'Scala'; }
+  pre.src-shell:before { content: 'Shell Script'; }
+  pre.src-ebnf2ps:before { content: 'ebfn2ps'; }
+  /* additional language identifiers per "defun org-babel-execute"
+       in ob-*.el */
+  pre.src-cpp:before  { content: 'C++'; }
+  pre.src-abc:before  { content: 'ABC'; }
+  pre.src-coq:before  { content: 'Coq'; }
+  pre.src-groovy:before  { content: 'Groovy'; }
+  /* additional language identifiers from org-babel-shell-names in
+     ob-shell.el: ob-shell is the only babel language using a lambda to put
+     the execution function name together. */
+  pre.src-bash:before  { content: 'bash'; }
+  pre.src-csh:before  { content: 'csh'; }
+  pre.src-ash:before  { content: 'ash'; }
+  pre.src-dash:before  { content: 'dash'; }
+  pre.src-ksh:before  { content: 'ksh'; }
+  pre.src-mksh:before  { content: 'mksh'; }
+  pre.src-posh:before  { content: 'posh'; }
+  /* Additional Emacs modes also supported by the LaTeX listings package */
+  pre.src-ada:before { content: 'Ada'; }
+  pre.src-asm:before { content: 'Assembler'; }
+  pre.src-caml:before { content: 'Caml'; }
+  pre.src-delphi:before { content: 'Delphi'; }
+  pre.src-html:before { content: 'HTML'; }
+  pre.src-idl:before { content: 'IDL'; }
+  pre.src-mercury:before { content: 'Mercury'; }
+  pre.src-metapost:before { content: 'MetaPost'; }
+  pre.src-modula-2:before { content: 'Modula-2'; }
+  pre.src-pascal:before { content: 'Pascal'; }
+  pre.src-ps:before { content: 'PostScript'; }
+  pre.src-prolog:before { content: 'Prolog'; }
+  pre.src-simula:before { content: 'Simula'; }
+  pre.src-tcl:before { content: 'tcl'; }
+  pre.src-tex:before { content: 'TeX'; }
+  pre.src-plain-tex:before { content: 'Plain TeX'; }
+  pre.src-verilog:before { content: 'Verilog'; }
+  pre.src-vhdl:before { content: 'VHDL'; }
+  pre.src-xml:before { content: 'XML'; }
+  pre.src-nxml:before { content: 'XML'; }
+  /* add a generic configuration mode; LaTeX export needs an additional
+     (add-to-list 'org-latex-listings-langs '(conf " ")) in .emacs */
+  pre.src-conf:before { content: 'Configuration File'; }
+
+  table { border-collapse:collapse; }
+  caption.t-above { caption-side: top; }
+  caption.t-bottom { caption-side: bottom; }
+  td, th { vertical-align:top;  }
+  th.org-right  { text-align: center;  }
+  th.org-left   { text-align: center;   }
+  th.org-center { text-align: center; }
+  td.org-right  { text-align: right;  }
+  td.org-left   { text-align: left;   }
+  td.org-center { text-align: center; }
+  dt { font-weight: bold; }
+  .footpara { display: inline; }
+  .footdef  { margin-bottom: 1em; }
+  .figure { padding: 1em; }
+  .figure p { text-align: center; }
+  .equation-container {
+    display: table;
+    text-align: center;
+    width: 100%;
+  }
+  .equation {
+    vertical-align: middle;
+  }
+  .equation-label {
+    display: table-cell;
+    text-align: right;
+    vertical-align: middle;
+  }
+  .inlinetask {
+    padding: 10px;
+    border: 2px solid gray;
+    margin: 10px;
+    background: #ffffcc;
+  }
+  #org-div-home-and-up
+   { text-align: right; font-size: 70%; white-space: nowrap; }
+  textarea { overflow-x: auto; }
+  .linenr { font-size: smaller }
+  .code-highlighted { background-color: #ffff00; }
+  .org-info-js_info-navigation { border-style: none; }
+  #org-info-js_console-label
+    { font-size: 10px; font-weight: bold; white-space: nowrap; }
+  .org-info-js_search-highlight
+    { background-color: #ffff00; color: #000000; font-weight: bold; }
+  .org-svg { width: 90%; }
+  /*]]>*/-->
+
+.title   { font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,monospace }
+.table-of-contents { font-family: monospace; color: red; }
+/* .text-table-of-contents { font-family: monospace; color: black; font-size:80%; } */
+.timestamp { font-family: monospace; color: darkgreen; }
+
+h1,h2 { font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,monospace; color
+:black;background-color:#F0F8FF; }
+h2,h3,h4 { color: darkblue; }
+code { color: darkblue; }
+body {font-family: Palatino, 'Palatino Linotype', serif; color:black; font-size: l
+arge }
+
+div.verbatim { color: black; background-color: white; border-style:outset; font-family: palatino font, mono
+space; font-size:80%;  font-weight:bold; }
+div.quote { font-family: palatino font, monospace; font-size:80%; }
+div.quotation { font-family: palatino font, monospace; font-size:80%; }
+pre.example { font-family: prestige, monospace; color:black; font-size:70%; background-color: lightyellow;
+ }
+pre.src { font-family: prestige, monospace; font-weight: bold; color:white; font-size:80%; background-color
+: black;  }
+
+div[id="text-table-of-contents"]{
+    font-family: palatino font, monospace; background-color:white;
+    border-style: dotted;
+    border-color: #98bf21;
+    border-width: 1px;
+}
+div[class^="outline-text"] {
+    background-color:#ebe6f0;
+    border-style: dotted;
+    border-color: #98bf21;
+    border-width: 1px;
+    font-family: Palatino, 'Palatino Linotype', serif; color:black; font-size: large
+}
+span[class="todo TESTING"] {
+    color:purple;
+}
+span[class="todo IN_PROGRESS"] {
+    color:brown;
+}
+span[class^="section-number"] {
+    color:grey;
+}
+span[class="journal"] {
+    color:darkblue;
+}
+span[class="year"] {
+    color:darkred;
+}
+
+</style>
+<script type="text/javascript">
+/*
+@licstart  The following is the entire license notice for the
+JavaScript code in this tag.
+
+Copyright (C) 2012-2020 Free Software Foundation, Inc.
+
+The JavaScript code in this tag is free software: you can
+redistribute it and/or modify it under the terms of the GNU
+General Public License (GNU GPL) as published by the Free Software
+Foundation, either version 3 of the License, or (at your option)
+any later version.  The code is distributed WITHOUT ANY WARRANTY;
+without even the implied warranty of MERCHANTABILITY or FITNESS
+FOR A PARTICULAR PURPOSE.  See the GNU GPL for more details.
+
+As additional permission under GNU GPL version 3 section 7, you
+may distribute non-source (e.g., minimized or compacted) forms of
+that code without the copy of the GNU GPL normally required by
+section 4, provided you include this license notice and a URL
+through which recipients can access the Corresponding Source.
+
+
+@licend  The above is the entire license notice
+for the JavaScript code in this tag.
+*/
+<!--/*--><![CDATA[/*><!--*/
+ function CodeHighlightOn(elem, id)
+ {
+   var target = document.getElementById(id);
+   if(null != target) {
+     elem.cacheClassElem = elem.className;
+     elem.cacheClassTarget = target.className;
+     target.className = "code-highlighted";
+     elem.className   = "code-highlighted";
+   }
+ }
+ function CodeHighlightOff(elem, id)
+ {
+   var target = document.getElementById(id);
+   if(elem.cacheClassElem)
+     elem.className = elem.cacheClassElem;
+   if(elem.cacheClassTarget)
+     target.className = elem.cacheClassTarget;
+ }
+/*]]>*///-->
+</script>
+</head>
author	Pjotr Prins	2020-05-24 10:31:24 -0500
committer	Pjotr Prins	2020-05-24 10:31:24 -0500
commit	c3bbd48601cdb4bec510db72bd2296724874f4f3 (patch)
tree	b61ca5b473cc30aa971264994697c70c06f20c56 /bh20simplewebuploader/templates
parent	a3c37de9105a784a8f73d3925269c847108baa17 (diff)
download	bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.tar.gz bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.tar.lz bh20-seq-resource-c3bbd48601cdb4bec510db72bd2296724874f4f3.zip