aboutsummaryrefslogtreecommitdiff
path: root/bh20simplewebuploader/templates/ebi-sample.xml
diff options
context:
space:
mode:
authorPjotr Prins2020-07-19 11:30:28 +0100
committerPjotr Prins2020-07-19 11:30:28 +0100
commit20cbfb593e89b07d68e6c16106a24e79cea61329 (patch)
tree6f37a96a45a0d428ee157f9616096a04e681c656 /bh20simplewebuploader/templates/ebi-sample.xml
parente4a89d13863517020bbe82293e52cea98418c983 (diff)
downloadbh20-seq-resource-20cbfb593e89b07d68e6c16106a24e79cea61329.tar.gz
bh20-seq-resource-20cbfb593e89b07d68e6c16106a24e79cea61329.tar.lz
bh20-seq-resource-20cbfb593e89b07d68e6c16106a24e79cea61329.zip
Moch XML output
Diffstat (limited to 'bh20simplewebuploader/templates/ebi-sample.xml')
-rw-r--r--bh20simplewebuploader/templates/ebi-sample.xml68
1 files changed, 68 insertions, 0 deletions
diff --git a/bh20simplewebuploader/templates/ebi-sample.xml b/bh20simplewebuploader/templates/ebi-sample.xml
new file mode 100644
index 0000000..694c471
--- /dev/null
+++ b/bh20simplewebuploader/templates/ebi-sample.xml
@@ -0,0 +1,68 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<SAMPLE_SET>
+ <SAMPLE alias="PubSeqSam0001" center_name="PubSeq01">
+ <TITLE>human gastric microbiota, mucosal</TITLE>
+ <SAMPLE_NAME>
+ <TAXON_ID>1284369</TAXON_ID>
+ <SCIENTIFIC_NAME>stomach metagenome</SCIENTIFIC_NAME>
+ <COMMON_NAME></COMMON_NAME>
+ </SAMPLE_NAME>
+ <SAMPLE_ATTRIBUTES>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>investigation type</TAG>
+ <VALUE>mimarks-survey</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>sequencing method</TAG>
+ <VALUE>pyrosequencing</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>collection date</TAG>
+ <VALUE>2010</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>host body site</TAG>
+ <VALUE>Mucosa of stomach</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>human-associated environmental package</TAG>
+ <VALUE>human-associated</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>geographic location (latitude)</TAG>
+ <VALUE>1.81</VALUE>
+ <UNITS>DD</UNITS>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>geographic location (longitude)</TAG>
+ <VALUE>-78.76</VALUE>
+ <UNITS>DD</UNITS>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>geographic location (country and/or sea)</TAG>
+ <VALUE>Colombia</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>geographic location (region and locality)</TAG>
+ <VALUE>Tumaco</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>environment (biome)</TAG>
+ <VALUE>coast</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>environment (feature)</TAG>
+ <VALUE>human-associated habitat</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>environment (material)</TAG>
+ <VALUE>gastric biopsy</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ <SAMPLE_ATTRIBUTE>
+ <TAG>ENA-CHECKLIST</TAG>
+ <VALUE>ERC000011</VALUE>
+ </SAMPLE_ATTRIBUTE>
+ </SAMPLE_ATTRIBUTES>
+ </SAMPLE>
+</SAMPLE_SET>
+