Merge branch 'master' into ebi-submit

1 files changed, 50 insertions, 0 deletions

diff --git a/bh20simplewebuploader/static/map.js b/bh20simplewebuploader/static/map.js
new file mode 100644
index 0000000..1003f7d
--- /dev/null
+++ b/bh20simplewebuploader/static/map.js
@@ -0,0 +1,50 @@
+
+var map = L.map( 'mapid', {
+    center: [51.505, -0.09],  // Default to U.S.A
+    minZoom: 2,
+    zoom: 0
+});
+
+L.tileLayer( 'http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png', {
+    attribution: '&copy; <a href="https://www.openstreetmap.org/copyright">OpenStreetMap</a> | <a href="http://covid19.genenetwork.org/">COVID-19 PubSeq</a>',
+    subdomains: ['a','b','c']
+}).addTo(map);
+
+
+function drawMap(){
+    var mymap = map;
+
+    fetch(scriptRoot + "api/getCountByGPS")
+        .then(response => {
+            console.log(response)
+            return response.json();
+        })
+        .then(data => {
+            updateMapMarkers(data);
+
+      });
+    document.getElementById("map_view").classList.remove("invisible");
+    map.invalidateSize();
+}
+
+
+
+/* This function updates the map with markers
+ *
+*/
+function updateMapMarkers(data) {
+    let markers = L.markerClusterGroup();
+    for (let i = 0; i < data.length; i++) {
+        let {"count": fastaCount, GPS, LocationLabel: label } = data[i];
+        let coordinates = GPS.split(" ");
+        if (!(coordinates == null)) {
+            let lat, lon;
+            [lon, lat] = coordinates.map(parseFloat);
+            let point = L.point()
+            marker = (L.marker([lat, lon]));
+            marker.bindPopup("<b>" + label + "</b><br/>" + "SARS-CoV-2<br/>sequences: " +fastaCount);
+            markers.addLayer(marker);
+        }
+    }
+    map.addLayer(markers);
+}