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authorPjotr Prins2020-04-19 12:22:17 -0500
committerGitHub2020-04-19 12:22:17 -0500
commit71adc4706ce6e5e6f354f8cb703a0ae4d1f555e4 (patch)
tree38d2099ecbb7b5237c8403c1ee62cfd9a9ac6801 /bh20sequploader
parent3bee6777fb4a61febbf1c22e62d71d933cfba4b0 (diff)
parent065b089ae034313c2e057647e494f4fb39331e03 (diff)
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Merge branch 'master' into patch-6
Diffstat (limited to 'bh20sequploader')
-rw-r--r--bh20sequploader/bh20seq-options.yml17
-rw-r--r--bh20sequploader/bh20seq-schema.yml2
2 files changed, 18 insertions, 1 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
new file mode 100644
index 0000000..d05be5a
--- /dev/null
+++ b/bh20sequploader/bh20seq-options.yml
@@ -0,0 +1,17 @@
+# Contains suggested human-readable field values and their corresponding IRIs.
+# Keyed on the field names in the types in the schema. Relies on field names
+# being unique or at least using the same options in different containing
+# types.
+
+host_age_unit:
+ Years: http://purl.obolibrary.org/obo/UO_0000036
+ Months: http://purl.obolibrary.org/obo/UO_0000035
+ Weeks: http://purl.obolibrary.org/obo/UO_0000034
+ Days: http://purl.obolibrary.org/obo/UO_0000033
+ Hours: http://purl.obolibrary.org/obo/UO_0000032
+
+host_sex:
+ Male: http://purl.obolibrary.org/obo/NCIT_C20197
+ Female: http://purl.obolibrary.org/obo/NCIT_C27993
+ Intersex: http://purl.obolibrary.org/obo/NCIT_C45908
+ Unknown: http://purl.obolibrary.org/obo/NCIT_C17998
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 7ffc15b..4cd0865 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -30,7 +30,7 @@ $graph:
# jsonldPredicate:
# _id: http://purl.obolibrary.org/obo/NOMEN_0000037
host_sex:
- doc: Sex of the host as define in NCIT, IRI expected (http://purl.obolibrary.org/obo/C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female) or unkown (http://purl.obolibrary.org/obo/NCIT_C17998))
+ doc: Sex of the host as defined in NCIT, IRI expected (http://purl.obolibrary.org/obo/NCIT_C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female), http://purl.obolibrary.org/obo/NCIT_C45908 (Intersex), or http://purl.obolibrary.org/obo/NCIT_C17998 (Unknown))
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047