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| author | lltommy | 2020-04-22 19:41:27 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-22 19:41:27 +0200 |
| commit | a12fe94f174da766be612fbb2712b4db2ba98296 (patch) | |
| tree | 0c1a21fcfc638460d91309f7dfac3fdc967ca7c1 /bh20sequploader | |
| parent | ba8b5d364f0ba96f3fef5214137d30ed00a8079d (diff) | |
| download | bh20-seq-resource-a12fe94f174da766be612fbb2712b4db2ba98296.tar.gz bh20-seq-resource-a12fe94f174da766be612fbb2712b4db2ba98296.tar.lz bh20-seq-resource-a12fe94f174da766be612fbb2712b4db2ba98296.zip | |
Small changes all around, trying to make the importer/metadata better
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 4 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 25 |
2 files changed, 17 insertions, 12 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 1ceebe2..80013c3 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -25,7 +25,7 @@ $graph: jsonldPredicate: _id: http://semanticscience.org/resource/SIO_000115 host_sex: - doc: Sex of the host as defined in NCIT, IRI expected (http://purl.obolibrary.org/obo/NCIT_C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female), http://purl.obolibrary.org/obo/NCIT_C45908 (Intersex), or http://purl.obolibrary.org/obo/NCIT_C17998 (Unknown)) + doc: Sex of the host as defined in PATO, expect male () or female () type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/PATO_0000047 @@ -144,7 +144,7 @@ $graph: fields: sample_sequencing_technology: doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION) - type: string + type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/OBI_0600047 _type: "@id" diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 31e714f..8d0055e 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -23,35 +23,40 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 ] ?; obo:PATO_0000011 xsd:integer ?; obo:NCIT_C42574 [ obo:UO_~ ] ?; - sio:SIO_001167 xsd:string ?; + obo:NCIT_C25688 xsd:string ? ; efo:EFO_0000727 xsd:string ?; + obo:VO_0000002 xsd:string ?; + sio:SIO_001167 xsd:string ?; } :sampleShape { sio:SIO_000115 xsd:string; - obo:GAZ_00000448 [wikidata:~] ; evs:C25164 xsd:string; + obo:GAZ_00000448 [wikidata:~] ; obo:OBI_0001895 xsd:string ?; - sio:SIO_001167 xsd:string ?; - obo:OBI_0001472 xsd:string ?; + obo:NCIT_C41206 xsd:string ?; obo:OBI_0001479 IRI {0,2}; + obo:OBI_0001472 xsd:string ?; + sio:SIO_001167 xsd:string ?; } :submitterShape { obo:NCIT_C42781 xsd:string ; - obo:NCIT_C37984 xsd:string ?; - obo:NCIT_C37900 xsd:string ?; sio:SIO_000116 xsd:string ?; - obo:OBI_0600047 xsd:string ?; - sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/?; sio:SIO_000172 xsd:string ?; + obo:NCIT_C37984 xsd:string ?; + obo:OBI_0600047 xsd:string ?; + obo:NCIT_C37900 xsd:string ?; efo:EFO_0001741 xsd:string ?; + obo:NCIT_C19026 xsd:string ?; + sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/?; } :technologyShape { - obo:OBI_0600047 IRI {0,2} ; - obo:FLU_0000848 xsd:double ?; + obo:OBI_0600047 IRI {0,2} ?; efo:EFO_0002699 xsd:string ?; + obo:FLU_0000848 xsd:double {0,2}; + sio:SIO_001167 xsd:string ?; } :virusShape{ |