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| author | Pjotr Prins | 2020-04-13 08:21:56 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-04-13 08:21:56 -0500 |
| commit | 05c351d0a8059c06f91b88e9beec6e5720bac005 (patch) | |
| tree | 7b92377a95e72c543428023776d43c98ffc9f593 /bh20sequploader | |
| parent | e00caedf7d3e86879f0230f08b0b4c448474b502 (diff) | |
| parent | 51fc61bae3ed2eae9719c1aabf959d47468724b2 (diff) | |
| download | bh20-seq-resource-05c351d0a8059c06f91b88e9beec6e5720bac005.tar.gz bh20-seq-resource-05c351d0a8059c06f91b88e9beec6e5720bac005.tar.lz bh20-seq-resource-05c351d0a8059c06f91b88e9beec6e5720bac005.zip | |
Merge branch 'master' of github.com:arvados/bh20-seq-resource
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 81a7f22..2d2e4c9 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -13,11 +13,11 @@ $graph: type: record fields: host_species: - ## autocomplete # NCBITAXON doc: Host species as defined in NCBITaxon (e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens) type: string jsonldPredicate: _id: http://www.ebi.ac.uk/efo/EFO_0000532 + _type: "@id" host_id: doc: Identifer for the host. If you submit multiple samples from the same host, use the same host_id for those samples type: string @@ -33,16 +33,18 @@ $graph: type: string jsonldPredicate: _id: http://purl.obolibrary.org/obo/PATO_0000047 + _type: "@id" host_age: doc: Age of the host as number (e.g. 50) type: int? jsonldPredicate: _id: http://purl.obolibrary.org/obo/PATO_0000011 host_age_unit: - doc: Unit of host age.... this field is unstable as of now (might be removed) + doc: Unit of host age e.g. http://purl.obolibrary.org/obo/UO_0000036 type: string? jsonldPredicate: - _id: http://purl.obolibrary.org/obo/UO_0000036 + _id: http://purl.obolibrary.org/obo/NCIT_C42574 + _type: "@id" host_health_status: doc: A condition or state at a particular time type: string? @@ -91,6 +93,7 @@ $graph: type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/GAZ_00000448 + _type: "@id" sample_storage_conditions: doc: Information aboout storage of a specified type, e.g. frozen specimen, paraffin, fresh .... type: string? @@ -120,6 +123,7 @@ $graph: type: string? jsonldPredicate: _id: http://edamontology.org/data_1875 + _type: "@id" virus_strain: doc: Name of the virus strain type: string? |