diff options
author | Pjotr Prins | 2020-05-28 09:52:22 -0500 |
---|---|---|
committer | Pjotr Prins | 2020-05-28 09:52:22 -0500 |
commit | aad579f05dbfc7bacf11419a8d5ec48697471b24 (patch) | |
tree | b8f6752922c41cc43dc0de62be56b8fa02fe4123 /bh20sequploader | |
parent | 426d826ed3c3f77c1ee7af53c7b41dc3c1979485 (diff) | |
download | bh20-seq-resource-aad579f05dbfc7bacf11419a8d5ec48697471b24.tar.gz bh20-seq-resource-aad579f05dbfc7bacf11419a8d5ec48697471b24.tar.lz bh20-seq-resource-aad579f05dbfc7bacf11419a8d5ec48697471b24.zip |
Uploader: validate metadata first (it is faster)
Diffstat (limited to 'bh20sequploader')
-rw-r--r-- | bh20sequploader/main.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 10d1029..0d463f7 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -26,16 +26,16 @@ def main(): api = arvados.api(host=ARVADOS_API_HOST, token=ARVADOS_API_TOKEN, insecure=True) + if not qc_metadata(args.metadata.name): + print("Failed metadata qc") + exit(1) + try: target = qc_fasta(args.sequence) except ValueError as e: print(e) exit(1) - if not qc_metadata(args.metadata.name): - print("Failed metadata qc") - exit(1) - if args.validate: print("Valid") exit(0) |