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| author | Pjotr Prins | 2020-04-10 12:25:51 -0500 |
|---|---|---|
| committer | GitHub | 2020-04-10 12:25:51 -0500 |
| commit | b2d3b410cb5d9e0621cfb32bf71ea84d44bf19b1 (patch) | |
| tree | 0bfddd986d18b2bcdd4157d808ac6718866a584f /bh20sequploader/validation | |
| parent | 686bb7e2b3e3bdb326553f2094a07d4f987e303b (diff) | |
| parent | bef2a43185f9494398f5d5a8cdb6c5f34352f912 (diff) | |
| download | bh20-seq-resource-b2d3b410cb5d9e0621cfb32bf71ea84d44bf19b1.tar.gz bh20-seq-resource-b2d3b410cb5d9e0621cfb32bf71ea84d44bf19b1.tar.lz bh20-seq-resource-b2d3b410cb5d9e0621cfb32bf71ea84d44bf19b1.zip | |
Merge pull request #6 from uniqueg/fa_fq_validation
validate seq format with magic file
Diffstat (limited to 'bh20sequploader/validation')
| -rw-r--r-- | bh20sequploader/validation/Makefile | 4 | ||||
| -rw-r--r-- | bh20sequploader/validation/formats | 4 | ||||
| -rw-r--r-- | bh20sequploader/validation/formats.mgc | bin | 0 -> 1032 bytes |
3 files changed, 8 insertions, 0 deletions
diff --git a/bh20sequploader/validation/Makefile b/bh20sequploader/validation/Makefile new file mode 100644 index 0000000..1ca13fb --- /dev/null +++ b/bh20sequploader/validation/Makefile @@ -0,0 +1,4 @@ +compile: formats.mgc + +formats.mgc : + file -C -m formats diff --git a/bh20sequploader/validation/formats b/bh20sequploader/validation/formats new file mode 100644 index 0000000..ac804cf --- /dev/null +++ b/bh20sequploader/validation/formats @@ -0,0 +1,4 @@ +0 regex \^\>.+\r?\n([acgtnACGTN]+\r?\n)*[acgtnACGTN]+(\r?\n)?$ FASTA +!:mime text/fasta +0 regex \^@.+\r?\n[acgtnACGTN]*\n\\+.*\n[!-i]*(\r\n)? FASTQ +!:mime text/fastq
\ No newline at end of file diff --git a/bh20sequploader/validation/formats.mgc b/bh20sequploader/validation/formats.mgc Binary files differnew file mode 100644 index 0000000..bff282a --- /dev/null +++ b/bh20sequploader/validation/formats.mgc |