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| author | lltommy | 2020-04-07 19:51:49 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-07 19:51:49 +0200 |
| commit | 40df65dec296b81650987c8ee4f832b703ab8f74 (patch) | |
| tree | 7c66d6c8c3e836d08cd6a9361982385e7ffa0b1c /bh20sequploader/qc_metadata.py | |
| parent | 9b1c125f91469074c7586a1278d89b85919e3eae (diff) | |
| download | bh20-seq-resource-40df65dec296b81650987c8ee4f832b703ab8f74.tar.gz bh20-seq-resource-40df65dec296b81650987c8ee4f832b703ab8f74.tar.lz bh20-seq-resource-40df65dec296b81650987c8ee4f832b703ab8f74.zip | |
adding dummy metadata qc to the project
Diffstat (limited to 'bh20sequploader/qc_metadata.py')
| -rw-r--r-- | bh20sequploader/qc_metadata.py | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py new file mode 100644 index 0000000..0632777 --- /dev/null +++ b/bh20sequploader/qc_metadata.py @@ -0,0 +1,13 @@ +import yamale + +## NOTE: this is just a DUMMY. Everything about this can and will change +def qc_metadata(metadatafile): + print("Start metadata validation...") + schema = yamale.make_schema('../example/dummyschema.yaml') + data = yamale.make_data(metadatafile) + # Validate data against the schema. Throws a ValueError if data is invalid. + yamale.validate(schema, data) + print("...complete!") + +#qc_metadata("../example/metadata.yaml") + |