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| author | Pjotr Prins | 2020-07-17 11:08:15 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-07-17 11:08:15 +0100 |
| commit | 16bb5df907c79cd0ce6bea0015821a2ce51fb992 (patch) | |
| tree | ddb9677cddcc463bb514300189cbd4300b9117ed /bh20sequploader/qc_fasta.py | |
| parent | 0be9983ef88fd3b925d8fa53e7f9ab2a28703bc0 (diff) | |
| parent | c69046ee9a5e24eadcd8cb885633328b0fd88011 (diff) | |
| download | bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.tar.gz bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.tar.lz bh20-seq-resource-16bb5df907c79cd0ce6bea0015821a2ce51fb992.zip | |
Merge branch 'master' into ebi-submit
Diffstat (limited to 'bh20sequploader/qc_fasta.py')
| -rw-r--r-- | bh20sequploader/qc_fasta.py | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/bh20sequploader/qc_fasta.py b/bh20sequploader/qc_fasta.py index 37eb4e8..0c7e16d 100644 --- a/bh20sequploader/qc_fasta.py +++ b/bh20sequploader/qc_fasta.py @@ -84,10 +84,8 @@ def qc_fasta(arg_sequence, check_with_clustalw=True): except Exception as e: logging.warn("QC against reference sequence using 'minimap2': %s", e, exc_info=e) - if similarity and similarity < 70.0: + if similarity < 70.0: raise ValueError("QC fail: alignment to reference was less than 70%% (was %2.2f%%)" % (similarity)) - if similarity == 0: - raise ValueError("QC fail") return ("sequence.fasta"+gz, seqlabel) elif seq_type == "text/fastq": |