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authorAndreaGuarracino2020-08-26 17:16:14 +0200
committerAndreaGuarracino2020-08-26 17:16:14 +0200
commitb4b4b826ae477acdb5d2c3372a69673029ea805c (patch)
treef38099b3205ef038a6ca77dfb6093dd4a998ce15 /bh20sequploader/main.py
parent9107e59b2e69c4f3f3369175d57631ed878009e7 (diff)
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updated parameter name
Diffstat (limited to 'bh20sequploader/main.py')
-rw-r--r--bh20sequploader/main.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
index 6049bf9..d5de63e 100644
--- a/bh20sequploader/main.py
+++ b/bh20sequploader/main.py
@@ -38,7 +38,7 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True):
target = []
try:
log.debug("FASTA/FASTQ QC" if do_qc else "Limited FASTA/FASTQ QC")
- target.append(qc_fasta(sequence_p1, check_with_clustalw=do_qc))
+ target.append(qc_fasta(sequence_p1, check_with_mimimap2=do_qc))
if sequence_p2:
target.append(qc_fasta(sequence_p2))
target[0] = ("reads_1."+target[0][0][6:], target[0][1])