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| author | AndreaGuarracino | 2020-08-26 17:16:14 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-08-26 17:16:14 +0200 |
| commit | b4b4b826ae477acdb5d2c3372a69673029ea805c (patch) | |
| tree | f38099b3205ef038a6ca77dfb6093dd4a998ce15 /bh20sequploader/main.py | |
| parent | 9107e59b2e69c4f3f3369175d57631ed878009e7 (diff) | |
| download | bh20-seq-resource-b4b4b826ae477acdb5d2c3372a69673029ea805c.tar.gz bh20-seq-resource-b4b4b826ae477acdb5d2c3372a69673029ea805c.tar.lz bh20-seq-resource-b4b4b826ae477acdb5d2c3372a69673029ea805c.zip | |
updated parameter name
Diffstat (limited to 'bh20sequploader/main.py')
| -rw-r--r-- | bh20sequploader/main.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 6049bf9..d5de63e 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -38,7 +38,7 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): target = [] try: log.debug("FASTA/FASTQ QC" if do_qc else "Limited FASTA/FASTQ QC") - target.append(qc_fasta(sequence_p1, check_with_clustalw=do_qc)) + target.append(qc_fasta(sequence_p1, check_with_mimimap2=do_qc)) if sequence_p2: target.append(qc_fasta(sequence_p2)) target[0] = ("reads_1."+target[0][0][6:], target[0][1]) |