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| author | lltommy | 2020-04-09 20:38:55 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-09 20:38:55 +0200 |
| commit | deedb2ed7046bbe81136b8d9d1edc353984d356b (patch) | |
| tree | 5e94e97359acb265a65c1fb7ba3b8015b0f3ae58 /bh20sequploader/bh20seq-schema.yml | |
| parent | d7498093d0f5e0db052ef88815d57c2648d09425 (diff) | |
| download | bh20-seq-resource-deedb2ed7046bbe81136b8d9d1edc353984d356b.tar.gz bh20-seq-resource-deedb2ed7046bbe81136b8d9d1edc353984d356b.tar.lz bh20-seq-resource-deedb2ed7046bbe81136b8d9d1edc353984d356b.zip | |
Adding functionality of turning keys into ontology terms (URI). This is work in progress - of course!
Diffstat (limited to 'bh20sequploader/bh20seq-schema.yml')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 30 |
1 files changed, 24 insertions, 6 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 38cfb48..fd9e854 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -3,14 +3,20 @@ $graph: - name: hostSchema type: record fields: + host_species: + type: string + jsonldPredicate: + _id: http://www.ebi.ac.uk/efo/EFO_0000532 host_id: string - host_species: string host_common_name: string? host_sex: string? host_age: int? host_age_unit: string? host_health_status: string? - host_treatment: string? + host_treatment: + type: string? + jsonldPredicate: + _id: http://www.ebi.ac.uk/efo/EFO_0000727 additional_host_information: string? - name: sampleSchema @@ -20,7 +26,10 @@ $graph: collecting_institution: string specimen_source: string? collection_date: string? - collection_location: string? + collection_location: + type: string? + jsonldPredicate: + _id: https://schema.org/fromLocation sample_storage_conditions: string? additional_collection_information: string? @@ -33,9 +42,18 @@ $graph: - name: technologySchema type: record fields: - sample_sequencing_technology: string - sequence_assembly_method: string? - sequencing_coverage: string? + sample_sequencing_technology: + type: string + jsonldPredicate: + _id: http://www.ebi.ac.uk/efo/EFO_0000532 + sequence_assembly_method: + type: string? + jsonldPredicate: + _id: http://www.ebi.ac.uk/efo/EFO_0002699 + sequencing_coverage: + type: string? + jsonldPredicate: + _id: http://purl.obolibrary.org/obo/FLU_0000848 - name: submitterSchema type: record |