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| author | lltommy | 2020-04-18 19:11:57 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-18 19:11:57 +0200 |
| commit | bbca5ac9b2538e410efe3e09651f87e5573145de (patch) | |
| tree | 0f120edbc392a72c0d6a3797f0a1c0dd7370293a /bh20sequploader/bh20seq-schema.yml | |
| parent | 7cf44a7aed6dd190e16ac94958aefcf7bffed6a0 (diff) | |
| download | bh20-seq-resource-bbca5ac9b2538e410efe3e09651f87e5573145de.tar.gz bh20-seq-resource-bbca5ac9b2538e410efe3e09651f87e5573145de.tar.lz bh20-seq-resource-bbca5ac9b2538e410efe3e09651f87e5573145de.zip | |
Extending yaml schema a bit and adding additional information for the UI
Diffstat (limited to 'bh20sequploader/bh20seq-schema.yml')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 22 |
1 files changed, 21 insertions, 1 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index d8641a6..7ffc15b 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -84,6 +84,11 @@ $graph: type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/OBI_0001479 + specimen_source2: + doc: A specimen that derives from an anatomical part or substance arising from an organism, e.g. tissue, organ + type: string? + jsonldPredicate: + _id: http://purl.obolibrary.org/obo/OBI_0001479 collection_date: doc: Date when the sample was taken type: string? @@ -139,6 +144,11 @@ $graph: type: string jsonldPredicate: _id: http://purl.obolibrary.org/obo/OBI_0600047 + sample_sequencing_technology2: + doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION) + type: string? + jsonldPredicate: + _id: http://purl.obolibrary.org/obo/OBI_0600047 sequence_assembly_method: doc: Protocol which provides instructions on the alignment of sequencing reads to reference genome type: string? @@ -146,9 +156,19 @@ $graph: _id: http://www.ebi.ac.uk/efo/EFO_0002699 sequencing_coverage: doc: Sequence coverage defined as the average number of reads representing a given nucleotide (e.g. 100x) - type: int? + type: float? + jsonldPredicate: + _id: http://purl.obolibrary.org/obo/FLU_0000848 + sequencing_coverage2: + doc: If a second sequence technology was use you can submit its coverage here + type: float? jsonldPredicate: _id: http://purl.obolibrary.org/obo/FLU_0000848 + additional_technology_information: + doc: Field for additional technology information + type: string? + jsonldPredicate: + _id: http://semanticscience.org/resource/SIO_001167 - name: submitterSchema type: record |