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authorlltommy2020-04-22 20:43:09 +0200
committerlltommy2020-04-22 20:43:09 +0200
commit2d3f8b9707bd13433ca82449ad82dbc406a28f95 (patch)
tree97369ec8495ba6fa4784ed874017d266f9e04a64 /bh20sequploader/bh20seq-options.yml
parenta12fe94f174da766be612fbb2712b4db2ba98296 (diff)
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Including restrictions to the host status
Diffstat (limited to 'bh20sequploader/bh20seq-options.yml')
-rw-r--r--bh20sequploader/bh20seq-options.yml9
1 files changed, 9 insertions, 0 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
index da47e1a..68f6e79 100644
--- a/bh20sequploader/bh20seq-options.yml
+++ b/bh20sequploader/bh20seq-options.yml
@@ -14,6 +14,15 @@ host_sex:
Male: http://purl.obolibrary.org/obo/PATO_0000384
Female: http://purl.obolibrary.org/obo/PATO_0000383
+host_health_status:
+ healthy: http://purl.obolibrary.org/obo/NCIT_C115935
+ asymptomatic: http://purl.obolibrary.org/obo/NCIT_C3833
+ sympotmatic: http://purl.obolibrary.org/obo/NCIT_C25269
+ admitted to hospital: http://purl.obolibrary.org/obo/GENEPIO_0002020
+ discharged from hospital: http://purl.obolibrary.org/obo/GENEPIO_0001849
+ dead: http://purl.obolibrary.org/obo/NCIT_C28554
+ alive: http://purl.obolibrary.org/obo/NCIT_C37987
+
sample_sequencing_technology:
Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566