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| author | Peter Amstutz | 2020-07-03 16:36:55 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-07-03 16:36:55 -0400 |
| commit | 841af02eaa45c1b7395d5f4e4711de3c3661c146 (patch) | |
| tree | 7d94b10ea530b79ad0b4ecc9903b6b71455eddb8 | |
| parent | ae4cb3c2cf7103bbc84f52618bb755d7ce25775b (diff) | |
| download | bh20-seq-resource-841af02eaa45c1b7395d5f4e4711de3c3661c146.tar.gz bh20-seq-resource-841af02eaa45c1b7395d5f4e4711de3c3661c146.tar.lz bh20-seq-resource-841af02eaa45c1b7395d5f4e4711de3c3661c146.zip | |
Fix single arg upload
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
| -rw-r--r-- | bh20sequploader/main.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index c442af0..89c30e8 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -62,7 +62,7 @@ def main(): parser = argparse.ArgumentParser(description='Upload SARS-CoV-19 sequences for analysis') parser.add_argument('metadata', type=argparse.FileType('r'), help='sequence metadata json') parser.add_argument('sequence_p1', type=argparse.FileType('rb'), help='sequence FASTA/FASTQ') - parser.add_argument('sequence_p2', type=argparse.FileType('rb'), default=None, help='sequence FASTQ pair') + parser.add_argument('sequence_p2', type=argparse.FileType('rb'), default=None, nargs='?', help='sequence FASTQ pair') parser.add_argument("--validate", action="store_true", help="Dry run, validate only") args = parser.parse_args() |