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| author | Pjotr Prins | 2020-07-16 13:00:24 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-07-17 07:47:29 +0100 |
| commit | 0a94b15d1bb84042f5e136fd59974de41192b68d (patch) | |
| tree | d3cee5ab8a936b223be728e76f6455fd279d7c36 | |
| parent | 7a0a05a8df8d12eb55e6a2e6392d4d384f481c7c (diff) | |
| download | bh20-seq-resource-0a94b15d1bb84042f5e136fd59974de41192b68d.tar.gz bh20-seq-resource-0a94b15d1bb84042f5e136fd59974de41192b68d.tar.lz bh20-seq-resource-0a94b15d1bb84042f5e136fd59974de41192b68d.zip | |
Blog: workflows
| -rw-r--r-- | doc/blog/using-covid-19-pubseq-part4.org | 6 | ||||
| -rw-r--r-- | doc/web/about.org | 3 |
2 files changed, 8 insertions, 1 deletions
diff --git a/doc/blog/using-covid-19-pubseq-part4.org b/doc/blog/using-covid-19-pubseq-part4.org index 5fe71d1..8ad5e2d 100644 --- a/doc/blog/using-covid-19-pubseq-part4.org +++ b/doc/blog/using-covid-19-pubseq-part4.org @@ -10,6 +10,7 @@ * Table of Contents :TOC:noexport: - [[#what-does-this-mean][What does this mean?]] + - [[#where-can-i-find-the-workflows][Where can I find the workflows?]] - [[#modify-workflow][Modify Workflow]] * What does this mean? @@ -18,6 +19,11 @@ This means that when someone uploads a SARS-CoV-2 sequence using one of our tools (CLI or web-based) they add a sequence and some metadata which triggers a rerun of our workflows. +* Where can I find the workflows? + +Workflows are written in the common workflow language (CWL) and listed +on [[https://github.com/arvados/bh20-seq-resource/tree/master/workflows][github]]. PubSeq being an open project these workflows can be studied +and modified! * Modify Workflow diff --git a/doc/web/about.org b/doc/web/about.org index ad13bc3..1949e2d 100644 --- a/doc/web/about.org +++ b/doc/web/about.org @@ -140,7 +140,8 @@ See the [[http://covid19.genenetwork.org/blog]]! * How do I change the work flows? -See the [[http://covid19.genenetwork.org/blog]]! +Workflows are on [[https://github.com/arvados/bh20-seq-resource/tree/master/workflows][github]] and can be modified. See also the +[[[[http://covid19.genenetwork.org/blog]]][workflow blog]]. * How do I change the source code? |