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;;; ravanan --- High-reproducibility CWL runner powered by Guix
;;; Copyright © 2024, 2025 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ravanan.
;;;
;;; ravanan is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ravanan is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ravanan. If not, see <https://www.gnu.org/licenses/>.
(use-modules (srfi srfi-1)
(srfi srfi-64)
(ice-9 filesystem)
(ice-9 match)
(web uri)
(ravanan reader)
(ravanan work command-line-tool)
(ravanan work utils))
(define normalize-formal-input
(@@ (ravanan reader) normalize-formal-input))
(define normalize-formal-output
(@@ (ravanan reader) normalize-formal-output))
(define normalize-input
(@@ (ravanan reader) normalize-input))
(define (json=? tree1 tree2)
(cond
;; Arrays
((vector? tree1)
(lset= json=?
(vector->list tree1)
(vector->list tree2)))
;; Dictionaries
((list? tree1)
(lset= (match-lambda*
(((key1 . value1) (key2 . value2))
(and (string=? key1 key2)
(json=? value1 value2))))
tree1
tree2))
;; Atoms
(else
(equal? tree1 tree2))))
(test-begin "reader")
(test-equal "Coerce number to number"
37
(coerce-type 37 'number))
(test-assert "Normalize File type formal input"
(json=? '(("type" . "File")
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #t)))))
(normalize-formal-input
'(("type" . "File")
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize File array type formal input"
(json=? '(("type"
("type" . "array")
("items" . "File"))
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #t)))))
(normalize-formal-input
'(("type"
("type" . "array")
("items" . "File"))
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize array of File arrays type formal input"
(json=? '(("type"
("type" . "array")
("items" . (("type" . "array")
("items" . "File"))))
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #t)))))
(normalize-formal-input
'(("type"
("type" . "array")
("items" . (("type" . "array")
("items" . "File"))))
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize File type formal output"
(json=? '(("type" . "File")
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #f)))))
(normalize-formal-output
'(("type" . "File")
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize File array type formal output"
(json=? '(("type"
("type" . "array")
("items" . "File"))
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #f)))))
(normalize-formal-output
'(("type"
("type" . "array")
("items" . "File"))
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize array of File arrays type formal output"
(json=? '(("type"
("type" . "array")
("items" . (("type" . "array")
("items" . "File"))))
("id" . "foo")
("secondaryFiles" . #((("pattern" . ".bai")
("required" . #f)))))
(normalize-formal-output
'(("type"
("type" . "array")
("items" . (("type" . "array")
("items" . "File"))))
("id" . "foo")
("secondaryFiles" . #(".bai"))))))
(test-assert "Normalize inputs with only location"
(call-with-temporary-directory
(lambda (dir)
(json=? (let ((path (expand-file-name "foo" dir)))
`(("class" . "File")
("location" . ,(uri->string (build-uri 'file #:path path)))
("path" . ,path)
("basename" . "foo")
("nameroot" . "foo")
("nameext" . "")
("size" . 0)
("checksum" . "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709")))
(call-with-current-directory dir
(lambda ()
;; Create an actual file called "foo" so that canonicalize-path
;; works.
(call-with-output-file "foo"
(const #t))
(normalize-input '(("class" . "File")
("location" . "foo")))))))))
(test-assert "Normalize inputs with only path"
(call-with-temporary-directory
(lambda (dir)
(json=? (let ((path (expand-file-name "foo" dir)))
`(("class" . "File")
("location" . ,(uri->string (build-uri 'file #:path path)))
("path" . ,path)
("basename" . "foo")
("nameroot" . "foo")
("nameext" . "")
("size" . 0)
("checksum" . "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709")))
(call-with-current-directory dir
(lambda ()
;; Create an actual file called "foo" so that canonicalize-path
;; works.
(call-with-output-file "foo"
(const #t))
(normalize-input '(("class" . "File")
("path" . "foo")))))))))
(test-end "reader")
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