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;;; ravanan --- High-reproducibility CWL runner powered by Guix
;;; Copyright © 2025 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ravanan.
;;;
;;; ravanan is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ravanan is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ravanan. If not, see <https://www.gnu.org/licenses/>.
(define-module (e2e-tests)
#:use-module ((cwl-conformance) #:select (cwltest-suite-gexp))
#:use-module ((gnu packages bioinformatics) #:select (ccwl) #:prefix guix:)
#:use-module ((gnu packages guile-xyz) #:select (guile-run64))
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (ice-9 match))
(define ccwl
(let ((commit "badcc3df8488c95359d30f907c8da043fcc0c455")
(revision "0"))
(package
(inherit guix:ccwl)
(name "ccwl")
(version (git-version "0.4.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://git.systemreboot.net/ccwl")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1zwvjrvdvph7kgpd8scyn2masgy4dci3q7ndh2907nl8rp9skbq7"))))
(native-inputs
(modify-inputs (package-native-inputs guix:ccwl)
(prepend guile-run64))))))
(define (e2e-tools-gexp sources-directory)
(with-imported-modules '((guix build utils))
#~(begin
(use-modules (rnrs io ports)
(srfi srfi-26)
(ice-9 match)
(ice-9 popen)
(guix build utils))
(define (call-with-input-pipe command proc)
(match command
((prog args ...)
(let ((port #f))
(dynamic-wind
(lambda ()
(set! port (apply open-pipe* OPEN_READ prog args)))
(cut proc port)
(lambda ()
(unless (zero? (close-pipe port))
(error "Command invocation failed" command))))))))
(mkdir #$output)
;; Compile ccwl sources.
(for-each (lambda (source-file)
(call-with-output-file (string-append #$output
"/"
(basename source-file ".scm")
".cwl")
(cut display
(call-with-input-pipe (list #$(file-append ccwl "/bin/ccwl")
"compile"
source-file)
get-string-all)
<>)))
(find-files #$sources-directory "\\.scm$"))
;; Copy CWL files.
(for-each (lambda (cwl-file)
(copy-file cwl-file
(string-append #$output (basename cwl-file))))
(find-files #$sources-directory "\\.cwl$")))))
(define e2e-tools
(computed-file "e2e-tools"
(e2e-tools-gexp (local-file "../e2e-tests/tools"
#:recursive? #t))))
(define e2e-test-suite
(file-union "e2e-test-suite"
`(("tests.yaml" ,(local-file "../e2e-tests/tests.yaml"))
("tools" ,e2e-tools)
("jobs" ,(local-file "../e2e-tests/jobs"
#:recursive? #t)))))
(define-public e2e-tests
(program-file "e2e-tests"
(cwltest-suite-gexp (file-append e2e-test-suite "/tests.yaml")
(local-file "../e2e-tests/manifest.scm"))))
e2e-tests
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