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;;; ravanan --- High-reproducibility CWL runner powered by Guix
;;; Copyright © 2025 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ravanan.
;;;
;;; ravanan is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ravanan is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ravanan. If not, see <https://www.gnu.org/licenses/>.
(define-module (e2e-tests)
#:use-module ((cwl-conformance) #:select (cwltest-suite-gexp))
#:use-module ((gnu packages bioinformatics) #:select (ccwl))
#:use-module (guix gexp)
#:use-module (ice-9 match))
(define (ccwl-compile source-file)
#~(begin
(use-modules (rnrs io ports)
(srfi srfi-26)
(ice-9 match)
(ice-9 popen))
(define (call-with-input-pipe command proc)
(match command
((prog args ...)
(let ((port #f))
(dynamic-wind
(lambda ()
(set! port (apply open-pipe* OPEN_READ prog args)))
(cut proc port)
(lambda ()
(unless (zero? (close-pipe port))
(error "Command invocation failed" command))))))))
(call-with-output-file #$output
(cut display
(call-with-input-pipe '(#$(file-append ccwl "/bin/ccwl")
"compile"
#$source-file)
get-string-all)
<>))))
(define e2e-tools-ccwl-sources
`(("hello-world.scm" . ,(local-file "../e2e-tests/tools/hello-world.scm"))))
(define e2e-tools
(file-union "e2e-tools"
(map (match-lambda
((ccwl-source-filename . ccwl-source-file)
(let ((cwl-filename (string-append (basename ccwl-source-filename ".scm")
".cwl")))
(list cwl-filename
(computed-file cwl-filename
(ccwl-compile ccwl-source-file))))))
e2e-tools-ccwl-sources)))
(define e2e-test-suite
(file-union "e2e-test-suite"
`(("tests.yaml" ,(local-file "../e2e-tests/tests.yaml"))
("tools" ,e2e-tools)
("jobs" ,(local-file "../e2e-tests/jobs"
#:recursive? #t)))))
(define-public e2e-tests
(program-file "e2e-tests"
(cwltest-suite-gexp (file-append e2e-test-suite "/tests.yaml")
(local-file "../e2e-tests/manifest.scm"))))
e2e-tests
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