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### pyhegp --- Homomorphic encryption of genotypes and phenotypes
### Copyright © 2025 Arun Isaac <arunisaac@systemreboot.net>
###
### This file is part of pyhegp.
###
### pyhegp is free software: you can redistribute it and/or modify it
### under the terms of the GNU General Public License as published by
### the Free Software Foundation, either version 3 of the License, or
### (at your option) any later version.
###
### pyhegp is distributed in the hope that it will be useful, but
### WITHOUT ANY WARRANTY; without even the implied warranty of
### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
### General Public License for more details.
###
### You should have received a copy of the GNU General Public License
### along with pyhegp. If not, see <https://www.gnu.org/licenses/>.
import sys
import pandas as pd
if __name__ == "__main__":
df = pd.read_csv(sys.argv[1], sep="\t")
qtl = df.query("p < 1e-10")
# Assert that the QTL is on chromosome 4.
assert (qtl.chromosome == 4).all()
# Assert that the QTL is within 2 Mb of the expected position.
assert ((qtl.position - 137715608).abs() < 2*10**6).all()
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