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Homomorphic encryption of genotypes and phenotypes
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test_pyhegp.py
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Author
5 days
Catenate phenotype frames along the index.
Arun Isaac
5 days
Split catenable phenotype frames along the index.
Arun Isaac
5 days
Generalize split_data_frame to split along any axis.
Arun Isaac
5 days
Simplify split_data_frame so it is more composable.
Arun Isaac
6 days
Drop SNPs with a zero standard deviation.
Arun Isaac
6 days
Avoid wildcard import from helpers.strategies.
Arun Isaac
6 days
Test that ciphertext does not contain NA values.
Arun Isaac
7 days
Compare complete frame in test_cat_*.
Arun Isaac
7 days
Do not import unused settings from hypothesis.
Arun Isaac
7 days
Test cat_phenotype.
Arun Isaac
8 days
Rename cat subcommand to cat-genotype.
Arun Isaac
8 days
Merge, not concat, genotype frames.
Arun Isaac
8 days
Test cat_genotype.
Arun Isaac
9 days
Suffix CLI subcommand functions with _command.
Arun Isaac
10 days
Do not require output ciphertext file path.
Arun Isaac
10 days
Use open method of Path object, rather than the open function.
Arun Isaac
10 days
Test for existence of output files.
Arun Isaac
2025-08-06
Subset to common SNPs.
Arun Isaac
2025-08-06
Compute summary on encryption if not provided.
Arun Isaac
2025-08-06
Add simple workflow.
Arun Isaac
2025-08-06
Test joint workflow CLI.
Arun Isaac
2025-08-06
Move negate to pyhegp.utils.
Arun Isaac
2025-08-06
Loosen relative tolerance in test_pool_stats.
Arun Isaac
2025-08-01
Test solution of linear system after encryption.
Arun Isaac
2025-08-01
Separate standardization from encryption.
Arun Isaac
2025-08-01
Do not test encryption on order 1 matrices.
Arun Isaac
2025-07-17
Standardize before encryption.
Arun Isaac
2025-07-17
Add standardization.
Arun Isaac
2025-07-17
Add pool subcommand.
Arun Isaac
2025-07-17
Use default array shapes testing encryption/decryption.
Arun Isaac
2025-07-17
Reduce maximum matrix size testing encryption/decryption.
Arun Isaac
2025-07-17
Organize source into directory structure.
Arun Isaac