pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
43 hours	Specify PlantUML output filenames.	Arun Isaac
43 hours	Replace PlantUML image generation script with Guix computed-file.	Arun Isaac
43 hours	Hint at pyhegp commands in UML visualization.	Arun Isaac
43 hours	Add @startuml and @enduml tags.	Arun Isaac
2 days	Split up hsmice test into smaller computed files.	Arun Isaac
2 days	Exclude .guix and e2e-tests from the pyhegp package.	Arun Isaac
2 days	Detail SNP dropping.	Arun Isaac
2 days	Update README instructions with phenotype encryption.	Arun Isaac
2 days	Comment on QTL checking code.	Arun Isaac
4 days	Update r-mixed-model-gwas to 1.3.1.	Arun Isaac
4 days	Add end-to-end tests for hsmice dataset.	Arun Isaac
4 days	Construct empty genotype frame using series.	Arun Isaac
4 days	Roll cat_data_frames into cat_genotype.	Arun Isaac
4 days	Catenate phenotype frames along the index.	Arun Isaac
4 days	Split catenable phenotype frames along the index.	Arun Isaac
4 days	Generalize split_data_frame to split along any axis.	Arun Isaac
4 days	Simplify split_data_frame so it is more composable.	Arun Isaac
5 days	Generate unique SNPs in genotype frames without dropping duplicates.	Arun Isaac
5 days	Deduplicate genotype frame metadata generation.	Arun Isaac
5 days	Drop SNPs with a zero standard deviation.	Arun Isaac
5 days	Fix typo in comment: tha->that.	Arun Isaac
6 days	Avoid wildcard import from helpers.strategies.	Arun Isaac
6 days	Limit values in genotype and phenotype strategies.	Arun Isaac
6 days	Test that ciphertext does not contain NA values.	Arun Isaac
6 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac
6 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac
6 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac
6 days	Add keys strategy.	Arun Isaac
6 days	Raise exception if data frame to be written has NA values.	Arun Isaac
6 days	Add --force flag to encrypt subcommand permitting file overwriting.	Arun Isaac
7 days	Support encrypting phenotypes.	Arun Isaac
7 days	Compare complete frame in test_cat_*.	Arun Isaac
7 days	Do not import unused settings from hypothesis.	Arun Isaac
7 days	Test cat_phenotype.	Arun Isaac
7 days	Add cat-phenotype subcommand.	Arun Isaac
8 days	Rename cat subcommand to cat-genotype.	Arun Isaac
8 days	Add is_phenotype_metadata_column.	Arun Isaac
8 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
8 days	Set CI environment variable when building Guix package.	Arun Isaac
8 days	Merge, not concat, genotype frames.	Arun Isaac
8 days	Test cat_genotype.	Arun Isaac
8 days	Add is_genotype_metadata_column.	Arun Isaac
8 days	Drop duplicates in generated test genotype frames.	Arun Isaac
8 days	Catenate an empty list of genotypes.	Arun Isaac
8 days	Move hypothesis strategies to separate file.	Arun Isaac
8 days	Add cat_genotype workhorse function.	Arun Isaac
8 days	Suffix CLI subcommand functions with _command.	Arun Isaac
9 days	Do not require output ciphertext file path.	Arun Isaac
9 days	Pass dtype to read_csv.	Arun Isaac
9 days	Use open method of Path object, rather than the open function.	Arun Isaac