pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
27 hours	Replace PlantUML image generation script with Guix computed-file.	Arun Isaac
27 hours	Hint at pyhegp commands in UML visualization.	Arun Isaac
27 hours	Add @startuml and @enduml tags.	Arun Isaac
33 hours	Split up hsmice test into smaller computed files.	Arun Isaac
34 hours	Exclude .guix and e2e-tests from the pyhegp package.	Arun Isaac
34 hours	Detail SNP dropping.	Arun Isaac
34 hours	Update README instructions with phenotype encryption.	Arun Isaac
34 hours	Comment on QTL checking code.	Arun Isaac
3 days	Update r-mixed-model-gwas to 1.3.1.	Arun Isaac
3 days	Add end-to-end tests for hsmice dataset.	Arun Isaac
3 days	Construct empty genotype frame using series.	Arun Isaac
3 days	Roll cat_data_frames into cat_genotype.	Arun Isaac
3 days	Catenate phenotype frames along the index.	Arun Isaac
3 days	Split catenable phenotype frames along the index.	Arun Isaac
3 days	Generalize split_data_frame to split along any axis.	Arun Isaac
3 days	Simplify split_data_frame so it is more composable.	Arun Isaac
4 days	Generate unique SNPs in genotype frames without dropping duplicates.	Arun Isaac
4 days	Deduplicate genotype frame metadata generation.	Arun Isaac
4 days	Drop SNPs with a zero standard deviation.	Arun Isaac
4 days	Fix typo in comment: tha->that.	Arun Isaac
5 days	Avoid wildcard import from helpers.strategies.	Arun Isaac
5 days	Limit values in genotype and phenotype strategies.	Arun Isaac
5 days	Test that ciphertext does not contain NA values.	Arun Isaac
5 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac
5 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac
5 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac
5 days	Add keys strategy.	Arun Isaac
5 days	Raise exception if data frame to be written has NA values.	Arun Isaac
5 days	Add --force flag to encrypt subcommand permitting file overwriting.	Arun Isaac
6 days	Support encrypting phenotypes.	Arun Isaac
6 days	Compare complete frame in test_cat_*.	Arun Isaac
6 days	Do not import unused settings from hypothesis.	Arun Isaac
6 days	Test cat_phenotype.	Arun Isaac
6 days	Add cat-phenotype subcommand.	Arun Isaac
7 days	Rename cat subcommand to cat-genotype.	Arun Isaac
7 days	Add is_phenotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
7 days	Set CI environment variable when building Guix package.	Arun Isaac
7 days	Merge, not concat, genotype frames.	Arun Isaac
7 days	Test cat_genotype.	Arun Isaac
7 days	Add is_genotype_metadata_column.	Arun Isaac
7 days	Drop duplicates in generated test genotype frames.	Arun Isaac
7 days	Catenate an empty list of genotypes.	Arun Isaac
7 days	Move hypothesis strategies to separate file.	Arun Isaac
7 days	Add cat_genotype workhorse function.	Arun Isaac
7 days	Suffix CLI subcommand functions with _command.	Arun Isaac
8 days	Do not require output ciphertext file path.	Arun Isaac
8 days	Pass dtype to read_csv.	Arun Isaac
8 days	Use open method of Path object, rather than the open function.	Arun Isaac
8 days	Do not skip blank lines when reading TSV files.	Arun Isaac