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Diffstat (limited to 'tests/test_serialization.py')
-rw-r--r-- | tests/test_serialization.py | 70 |
1 files changed, 70 insertions, 0 deletions
diff --git a/tests/test_serialization.py b/tests/test_serialization.py new file mode 100644 index 0000000..984a935 --- /dev/null +++ b/tests/test_serialization.py @@ -0,0 +1,70 @@ +### pyhegp --- Homomorphic encryption of genotypes and phenotypes +### Copyright © 2025 Arun Isaac <arunisaac@systemreboot.net> +### +### This file is part of pyhegp. +### +### pyhegp is free software: you can redistribute it and/or modify it +### under the terms of the GNU General Public License as published by +### the Free Software Foundation, either version 3 of the License, or +### (at your option) any later version. +### +### pyhegp is distributed in the hope that it will be useful, but +### WITHOUT ANY WARRANTY; without even the implied warranty of +### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +### General Public License for more details. +### +### You should have received a copy of the GNU General Public License +### along with pyhegp. If not, see <https://www.gnu.org/licenses/>. + +import tempfile + +from hypothesis import given, strategies as st +from hypothesis.extra.numpy import arrays, array_shapes +from pytest import approx + +from pyhegp.serialization import Summary, read_summary, write_summary, read_summary_headers + +@given(st.integers(), + arrays("float64", + st.shared(array_shapes(max_dims=1), key="number-of-snps"), + elements=st.floats()), + arrays("float64", + st.shared(array_shapes(max_dims=1), key="number-of-snps"), + elements=st.floats())) +def test_read_write_summary_are_inverses(n, mean, std): + with tempfile.TemporaryFile() as file: + write_summary(file, Summary(n, mean, std)) + file.seek(0) + summary = read_summary(file) + assert ((summary.n == n) and + (summary.mean == approx(mean, nan_ok=True)) and + (summary.std == approx(std, nan_ok=True))) + +@st.composite +def properties_and_whitespace(draw): + n = draw(st.integers(min_value=0, max_value=10)) + return (draw(st.dictionaries(st.text(st.characters(codec="ascii", + exclude_categories=("Cc", "Zs")), + min_size=1) + .filter(lambda key: not key.startswith("#")), + st.text(st.characters(codec="ascii", + exclude_categories=("Cc",)), + min_size=1), + min_size=n, max_size=n)), + draw(st.integers(min_value=0, max_value=10)), + draw(st.lists(st.integers(min_value=0, max_value=10), + min_size=n, max_size=n))) + +@given(properties_and_whitespace()) +def test_read_summary_headers_variable_whitespace(properties_and_whitespace): + properties, header_whitespace, key_value_whitespace = properties_and_whitespace + with tempfile.TemporaryFile() as file: + file.write(b"#") + file.write(b" " * header_whitespace) + file.write(b"pyhegp summary file version 1\n") + for (key, value), key_value_whitespace in zip(properties.items(), key_value_whitespace): + file.write(b"#") + file.write(b" " * key_value_whitespace) + file.write(f"{key} {value}\n".encode("ascii")) + file.seek(0) + assert properties == read_summary_headers(file) |