diff options
Diffstat (limited to 'test-data/genotype2.tsv')
| -rw-r--r-- | test-data/genotype2.tsv | 200 |
1 files changed, 100 insertions, 100 deletions
diff --git a/test-data/genotype2.tsv b/test-data/genotype2.tsv index 2e8addb..d0918d8 100644 --- a/test-data/genotype2.tsv +++ b/test-data/genotype2.tsv @@ -1,101 +1,101 @@ chromosome position reference Q_CFW-SW/100.0m Q_CFW-SW/100.0n Q_CFW-SW/100.0o Q_CFW-SW/100.0p Q_CFW-SW/100.0q -chr11 3200246 G -1.84350808471738 0.374208092217002 -0.582632615081028 0.414146883083756 -0.0555093645111274 -chr11 3205355 T -1.99661283674094 0.368105445669197 -0.4777836879161 0.408380317041571 -0.0767140555920759 -chr11 3218908 A -2.33412045722056 0.354845455496497 -0.221754186458724 0.37688160935603 -0.0873353962438486 -chr11 3414044 A 3.51245963337861 -0.332732952233851 -0.260368948458097 -0.345777199760014 0.239006508234292 -chr11 3460427 C 3.5493159235483 -0.326143671678857 -0.286137560985184 -0.347171827095571 0.0509775683778137 -chr11 3462290 A 3.54191739984598 -0.330278187738722 -0.297414751116114 -0.347661240841835 0.0407926625699646 -chr11 3462323 A 3.54202609716041 -0.329429150422093 -0.295321184276607 -0.347588988136862 0.0418372942548184 -chr11 3462325 T 3.54194654721272 -0.329680540550692 -0.295970383493875 -0.347602919853075 0.0414319180765401 -chr11 3462348 T 3.5410198026307 -0.331834321458327 -0.301810465553364 -0.347627541508438 0.0371575925147564 -chr11 3464016 A 3.54303988709683 -0.32796097164538 -0.290644525405396 -0.34791516227301 0.046440227089294 -chr11 3554197 C -3.48778299526233 0.322818181678957 0.321432222736126 0.33963450548457 0.0169936231514509 -chr11 3558414 C 3.36166120645191 -0.330542439419782 -0.342019598931388 -0.340706233078676 -0.0390880975698337 -chr11 3619052 G 1.71480446753335 -0.308896736315644 -0.33369718603669 -0.328843787084943 -0.0441698180746936 -chr11 3883306 G 0.293753207518779 -0.30788807799174 -0.241177348193442 -0.331196873621534 -0.269796780190066 -chr11 4017210 G 0.232157640497649 -0.350319993134813 -0.229595033127767 -0.404958489350945 -0.322595595252253 -chr11 4017211 A 0.229506622193419 -0.353254342996848 -0.232477434068502 -0.400450240395758 -0.32556467152306 -chr11 4017223 C 0.217081228832968 -0.366902543909585 -0.245908142579342 -0.379417775824552 -0.339356009763766 -chr11 4017385 G 0.22949764365654 -0.352558955672201 -0.231739670999114 -0.3967854780241 -0.325755662775939 -chr11 4022004 A 0.228160569443502 -0.354769943865309 -0.233206111125441 -0.399797967080931 -0.326554528659792 -chr11 4024616 T -0.723376603204909 -0.733001532475938 -0.7372648306716 1.1363207240424 -0.722988337065184 -chr11 4110988 C 0.698312263039184 0.800924480953091 0.761406253890723 -1.04410170387845 0.785892263541438 -chr11 4124677 C 0.70496932860432 0.799836949969044 0.761071731489501 -0.960131085163408 0.782094881078467 -chr11 4139413 C -0.716716677021036 -0.721753745636021 -0.719640310154982 1.08364897738564 -0.720960426769541 -chr11 4139426 G -0.717217774865291 -0.716983607520962 -0.717130644388245 1.08569847653848 -0.717038625819287 -chr11 4140742 A -0.71729221137757 -0.717336378438025 -0.717359008645657 1.08477543740212 -0.717331834507599 -chr11 4141532 T -0.718540204369189 -0.718621118383576 -0.718593298941792 1.07707297831749 -0.718420882376778 -chr11 4141701 C -0.717161620836538 -0.717240907731876 -0.717243675441939 1.08525303642948 -0.717247447615533 -chr11 4141949 G -0.718646564778533 -0.718766146355491 -0.718715463982206 1.07622387349138 -0.718539404889252 -chr11 4142088 T -0.71823287609713 -0.717628260959421 -0.717898984542483 1.07961736871314 -0.717595293654313 -chr11 4142629 A -0.717278777871569 -0.717450026198642 -0.717403726235102 1.08441535210714 -0.717418985380175 -chr11 4142987 C -0.72148312682356 -0.721422683515714 -0.721308964866359 1.03801943719759 -0.72037337205622 -chr11 4143502 C -0.717320739719986 -0.717716431907842 -0.717568394722387 1.08388897945042 -0.717637822347445 -chr11 4143779 A -0.717167292488009 -0.717035242965777 -0.717116658504622 1.08515789095508 -0.717068477847819 -chr11 4143838 C -0.717147068631901 -0.716897852583428 -0.717029898846575 1.08536314882013 -0.716953955822473 -chr11 4143850 G -0.717213969550485 -0.717359907604645 -0.717320085988794 1.0846666146757 -0.717338394920721 -chr11 4144873 A -0.717646502857318 -0.717343020985837 -0.717482051414596 1.08266849984345 -0.71733715247599 -chr11 4146736 T -0.719295037503277 -0.718924916939571 -0.719039917803006 1.07179678598084 -0.718663924312816 -chr11 4147532 A -0.71864362394822 -0.718726283536914 -0.718661236111641 1.07624165898597 -0.71849885734683 -chr11 4147579 A -0.718260370486217 -0.718110178735231 -0.718156187009786 1.07901671551677 -0.717984297760231 -chr11 4148004 G -0.717226481280043 -0.716886619564263 -0.717039845053179 1.08525901330057 -0.716940711345927 -chr11 4148006 G -0.717118619355085 -0.716976135769199 -0.717046712490321 1.08566532877162 -0.717010371938664 -chr11 4149618 A -0.7172453520675 -0.717115230592329 -0.717176161052848 1.08482069864759 -0.717128091930807 -chr11 4151366 G -0.712322376836406 -0.711592747187163 -0.711389908717919 0.934405306216649 -0.70898324591954 -chr11 4151391 T -0.712495674087235 -0.711670458882968 -0.711511251010203 0.935459943859139 -0.709091407973455 -chr11 4151936 G -0.717336015037064 -0.717251026271739 -0.71728812379056 1.08407722246726 -0.717242241236769 -chr11 4156606 C -0.712184350160321 -0.712099263852383 -0.711564850387554 0.933348994194728 -0.709461928259204 -chr11 4156658 A -0.712160662408346 -0.712213414763146 -0.711618939918272 0.933200090093567 -0.709553210430323 -chr11 4156678 T -0.712178760879967 -0.712124018918845 -0.711575828180688 0.933310908097337 -0.709482563607854 -chr11 4157061 A -0.717200518209567 -0.715982626607827 -0.716509221756828 1.08531485908454 -0.716183378849058 -chr11 4157575 C -0.717109807709024 -0.717015862771001 -0.71658390175858 0.967304864656219 -0.714881873581298 -chr11 4157625 A -0.712265914514344 -0.712168487673747 -0.711631476805544 0.933718068733739 -0.709554979224467 -chr11 4157692 A -0.712155003591404 -0.712110662931155 -0.711548196048088 0.933028831660255 -0.7094804843842 -chr11 4157786 A -0.712246134440487 -0.712174735323499 -0.711624393489018 0.933554516078269 -0.709557611467669 -chr11 4157829 T -0.712355881871092 -0.71230046315091 -0.711744756882735 0.934207406825641 -0.709690520887942 -chr11 4157846 G -0.71180891118674 -0.711742490561896 -0.711181367125373 0.930915687760296 -0.709089541678462 -chr11 4158681 A -0.711475026463688 -0.71144778829546 -0.710856809352801 0.92866045268976 -0.708772696355943 -chr11 4159249 A -0.717428921196616 -0.717583534459847 -0.717509923491081 1.0827186654884 -0.717521531682088 -chr11 4159512 C -0.712192686013088 -0.712172097328414 -0.711585970443488 0.932630640173811 -0.70956359815139 -chr11 4159576 G -0.717982516488989 -0.717924882319139 -0.717489333998605 0.974001813124341 -0.71591398994126 -chr11 4160767 C -0.717179896508214 -0.717369299658124 -0.717288381432999 1.08393134914407 -0.717335412621361 -chr11 4161449 A -0.72091196236575 -0.720697296812281 -0.720448443013459 1.00899752890441 -0.71927570230114 -chr11 4163009 A -0.711797865848754 -0.712084825020705 -0.711327925841513 0.929601785213333 -0.709414808073927 -chr11 4164110 C -0.717191201759884 -0.717074961377318 -0.717125934436846 1.08395279811741 -0.717092843643212 -chr11 4165583 A -0.718955413974389 -0.718876569701961 -0.718442503808193 0.982326490569035 -0.717031016379099 -chr11 4166188 A -0.71726709352654 -0.717290610541053 -0.717278460631668 1.08334080437294 -0.717274564211431 -chr11 4169047 G -0.718838529418667 -0.717028002355138 -0.717755630316123 1.0752600997737 -0.717118282304003 -chr11 4169344 C -0.717199520900371 -0.717232844122659 -0.717218688425162 1.08360056348562 -0.717224171920787 -chr11 4173901 G -0.718049696251839 -0.718802012095197 -0.718444946349651 1.078028758662 -0.718565663055328 -chr11 4174384 C -0.717408652832017 -0.717442287672052 -0.717421334037673 1.08238059254158 -0.717412616317635 -chr11 4177048 A -0.71754953890663 -0.71734658504658 -0.717423898321178 1.08181704384442 -0.717343819022524 -chr11 4178320 C -0.712585556620516 -0.712563515247885 -0.711805662392424 0.932034449232283 -0.71008342511052 -chr11 4178518 T -0.717304764111764 -0.717327766849757 -0.717316726117925 1.08301646437364 -0.717318841285015 -chr11 4183635 G -0.720903516222171 -0.721119322291914 -0.720834502297149 1.0540983540981 -0.720507316781903 -chr11 4185242 C -0.717412980512481 -0.717335138643241 -0.717368081854579 1.0825816339184 -0.717342338680934 -chr11 4209116 C -0.717576920733591 -0.716733202764943 -0.717095015143307 1.08205968265747 -0.716855421465394 -chr11 4211694 C -0.721263968733133 -0.721368307117039 -0.721040195670589 1.04871944893783 -0.720752660456167 -chr11 4228604 T -0.718122064366249 -0.717970961599229 -0.717994679172368 1.07832405021202 -0.717920579846766 -chr11 4229176 C -0.717375895914067 -0.717452132676217 -0.717419030257465 1.08237848866238 -0.717437830551702 -chr11 4229195 T -0.717407221823914 -0.717305264840515 -0.717349001943971 1.08235805103779 -0.717318402295316 -chr11 4230918 G -0.717572564778443 -0.717471513761131 -0.71750566662541 1.08146509080108 -0.717469359597226 -chr11 4237235 A -0.721665766023693 -0.721719430549821 -0.721288254577822 1.04107024911134 -0.721064705858673 -chr11 4238100 A -0.721639727803164 -0.721782986149825 -0.721316345536524 1.04167516030997 -0.721124981076818 -chr11 4246351 T -0.720227447583086 -0.719064443974966 -0.719363115454411 1.06394584867342 -0.718954664370266 -chr11 4246985 C -0.721761035825644 -0.721831572543912 -0.721348247767501 1.03950486377213 -0.72117812527265 -chr11 4261375 C -0.717466393196404 -0.717624629735558 -0.71754541516737 1.08233925922684 -0.717596908274335 -chr11 4273327 A -0.717620322329841 -0.717516141358348 -0.717541972275791 1.08282843184147 -0.717524362917971 -chr11 4283717 C 0.725141511778513 0.722032261450973 0.722741508082841 0.398756823483037 0.724168771780795 -chr11 4284110 A 0.706802780689424 0.705849098799315 0.705915612006191 0.607536326246621 0.7064593768528 -chr11 4285090 T 0.703506240655436 0.702819532634455 0.702624868648311 0.698497191548207 0.702379306243047 -chr11 4286016 T 0.699604459445676 0.699707961746524 0.69922373053996 0.698023583694863 0.699644087073396 -chr11 4288936 T 0.703879556067487 0.704018616681109 0.703071407322066 0.701194225915092 0.703163424553717 -chr11 4301371 G 0.699361423882248 0.699657950018314 0.698965370237459 0.698102631814313 0.699582683406617 -chr11 4310171 G 0.699715088082926 0.699608784690716 0.699066092237245 0.698763370123776 0.699540454631735 -chr11 4330042 T 0.703480102115801 0.703604529555106 0.702147736240715 0.70132652189276 0.702952651652309 -chr11 4908477 T -0.293699203192457 3.36836577785274 -0.293363763923421 -0.293657082315656 -0.293440814858647 -chr11 4941705 T -0.299084404879111 3.32727773853239 -0.301241745765604 -0.291662556511874 -0.301127933819991 -chr11 4944016 A -0.294479679561128 3.32738614985764 -0.294552436829388 -0.294358415705738 -0.294551973204904 -chr11 4945582 T -0.294490388246952 3.32729395308938 -0.294566396850457 -0.294365184294088 -0.294564980537536 -chr11 4949541 A -0.293378844746762 3.32707832324724 -0.294080159497328 -0.294969723718205 -0.293984591287535 -chr11 4971995 G -0.294795732224846 3.3243360204666 -0.295034169364629 -0.295920301050953 -0.294991758310906 +chr11 3200246 G -1.8435 0.3742 -0.5826 0.4141 -0.0555 +chr11 3205355 T -1.9966 0.3681 -0.4778 0.4084 -0.0767 +chr11 3218908 A -2.3341 0.3548 -0.2218 0.3769 -0.0873 +chr11 3414044 A 3.5125 -0.3327 -0.2604 -0.3458 0.239 +chr11 3460427 C 3.5493 -0.3261 -0.2861 -0.3472 0.051 +chr11 3462290 A 3.5419 -0.3303 -0.2974 -0.3477 0.0408 +chr11 3462323 A 3.542 -0.3294 -0.2953 -0.3476 0.0418 +chr11 3462325 T 3.5419 -0.3297 -0.296 -0.3476 0.0414 +chr11 3462348 T 3.541 -0.3318 -0.3018 -0.3476 0.0372 +chr11 3464016 A 3.543 -0.328 -0.2906 -0.3479 0.0464 +chr11 3554197 C -3.4878 0.3228 0.3214 0.3396 0.017 +chr11 3558414 C 3.3617 -0.3305 -0.342 -0.3407 -0.0391 +chr11 3619052 G 1.7148 -0.3089 -0.3337 -0.3288 -0.0442 +chr11 3883306 G 0.2938 -0.3079 -0.2412 -0.3312 -0.2698 +chr11 4017210 G 0.2322 -0.3503 -0.2296 -0.405 -0.3226 +chr11 4017211 A 0.2295 -0.3533 -0.2325 -0.4005 -0.3256 +chr11 4017223 C 0.2171 -0.3669 -0.2459 -0.3794 -0.3394 +chr11 4017385 G 0.2295 -0.3526 -0.2317 -0.3968 -0.3258 +chr11 4022004 A 0.2282 -0.3548 -0.2332 -0.3998 -0.3266 +chr11 4024616 T -0.7234 -0.733 -0.7373 1.1363 -0.723 +chr11 4110988 C 0.6983 0.8009 0.7614 -1.0441 0.7859 +chr11 4124677 C 0.705 0.7998 0.7611 -0.9601 0.7821 +chr11 4139413 C -0.7167 -0.7218 -0.7196 1.0836 -0.721 +chr11 4139426 G -0.7172 -0.717 -0.7171 1.0857 -0.717 +chr11 4140742 A -0.7173 -0.7173 -0.7174 1.0848 -0.7173 +chr11 4141532 T -0.7185 -0.7186 -0.7186 1.0771 -0.7184 +chr11 4141701 C -0.7172 -0.7172 -0.7172 1.0853 -0.7172 +chr11 4141949 G -0.7186 -0.7188 -0.7187 1.0762 -0.7185 +chr11 4142088 T -0.7182 -0.7176 -0.7179 1.0796 -0.7176 +chr11 4142629 A -0.7173 -0.7175 -0.7174 1.0844 -0.7174 +chr11 4142987 C -0.7215 -0.7214 -0.7213 1.038 -0.7204 +chr11 4143502 C -0.7173 -0.7177 -0.7176 1.0839 -0.7176 +chr11 4143779 A -0.7172 -0.717 -0.7171 1.0852 -0.7171 +chr11 4143838 C -0.7171 -0.7169 -0.717 1.0854 -0.717 +chr11 4143850 G -0.7172 -0.7174 -0.7173 1.0847 -0.7173 +chr11 4144873 A -0.7176 -0.7173 -0.7175 1.0827 -0.7173 +chr11 4146736 T -0.7193 -0.7189 -0.719 1.0718 -0.7187 +chr11 4147532 A -0.7186 -0.7187 -0.7187 1.0762 -0.7185 +chr11 4147579 A -0.7183 -0.7181 -0.7182 1.079 -0.718 +chr11 4148004 G -0.7172 -0.7169 -0.717 1.0853 -0.7169 +chr11 4148006 G -0.7171 -0.717 -0.717 1.0857 -0.717 +chr11 4149618 A -0.7172 -0.7171 -0.7172 1.0848 -0.7171 +chr11 4151366 G -0.7123 -0.7116 -0.7114 0.9344 -0.709 +chr11 4151391 T -0.7125 -0.7117 -0.7115 0.9355 -0.7091 +chr11 4151936 G -0.7173 -0.7173 -0.7173 1.0841 -0.7172 +chr11 4156606 C -0.7122 -0.7121 -0.7116 0.9333 -0.7095 +chr11 4156658 A -0.7122 -0.7122 -0.7116 0.9332 -0.7096 +chr11 4156678 T -0.7122 -0.7121 -0.7116 0.9333 -0.7095 +chr11 4157061 A -0.7172 -0.716 -0.7165 1.0853 -0.7162 +chr11 4157575 C -0.7171 -0.717 -0.7166 0.9673 -0.7149 +chr11 4157625 A -0.7123 -0.7122 -0.7116 0.9337 -0.7096 +chr11 4157692 A -0.7122 -0.7121 -0.7115 0.933 -0.7095 +chr11 4157786 A -0.7122 -0.7122 -0.7116 0.9336 -0.7096 +chr11 4157829 T -0.7124 -0.7123 -0.7117 0.9342 -0.7097 +chr11 4157846 G -0.7118 -0.7117 -0.7112 0.9309 -0.7091 +chr11 4158681 A -0.7115 -0.7114 -0.7109 0.9287 -0.7088 +chr11 4159249 A -0.7174 -0.7176 -0.7175 1.0827 -0.7175 +chr11 4159512 C -0.7122 -0.7122 -0.7116 0.9326 -0.7096 +chr11 4159576 G -0.718 -0.7179 -0.7175 0.974 -0.7159 +chr11 4160767 C -0.7172 -0.7174 -0.7173 1.0839 -0.7173 +chr11 4161449 A -0.7209 -0.7207 -0.7204 1.009 -0.7193 +chr11 4163009 A -0.7118 -0.7121 -0.7113 0.9296 -0.7094 +chr11 4164110 C -0.7172 -0.7171 -0.7171 1.084 -0.7171 +chr11 4165583 A -0.719 -0.7189 -0.7184 0.9823 -0.717 +chr11 4166188 A -0.7173 -0.7173 -0.7173 1.0833 -0.7173 +chr11 4169047 G -0.7188 -0.717 -0.7178 1.0753 -0.7171 +chr11 4169344 C -0.7172 -0.7172 -0.7172 1.0836 -0.7172 +chr11 4173901 G -0.718 -0.7188 -0.7184 1.078 -0.7186 +chr11 4174384 C -0.7174 -0.7174 -0.7174 1.0824 -0.7174 +chr11 4177048 A -0.7175 -0.7173 -0.7174 1.0818 -0.7173 +chr11 4178320 C -0.7126 -0.7126 -0.7118 0.932 -0.7101 +chr11 4178518 T -0.7173 -0.7173 -0.7173 1.083 -0.7173 +chr11 4183635 G -0.7209 -0.7211 -0.7208 1.0541 -0.7205 +chr11 4185242 C -0.7174 -0.7173 -0.7174 1.0826 -0.7173 +chr11 4209116 C -0.7176 -0.7167 -0.7171 1.0821 -0.7169 +chr11 4211694 C -0.7213 -0.7214 -0.721 1.0487 -0.7208 +chr11 4228604 T -0.7181 -0.718 -0.718 1.0783 -0.7179 +chr11 4229176 C -0.7174 -0.7175 -0.7174 1.0824 -0.7174 +chr11 4229195 T -0.7174 -0.7173 -0.7173 1.0824 -0.7173 +chr11 4230918 G -0.7176 -0.7175 -0.7175 1.0815 -0.7175 +chr11 4237235 A -0.7217 -0.7217 -0.7213 1.0411 -0.7211 +chr11 4238100 A -0.7216 -0.7218 -0.7213 1.0417 -0.7211 +chr11 4246351 T -0.7202 -0.7191 -0.7194 1.0639 -0.719 +chr11 4246985 C -0.7218 -0.7218 -0.7213 1.0395 -0.7212 +chr11 4261375 C -0.7175 -0.7176 -0.7175 1.0823 -0.7176 +chr11 4273327 A -0.7176 -0.7175 -0.7175 1.0828 -0.7175 +chr11 4283717 C 0.7251 0.722 0.7227 0.3988 0.7242 +chr11 4284110 A 0.7068 0.7058 0.7059 0.6075 0.7065 +chr11 4285090 T 0.7035 0.7028 0.7026 0.6985 0.7024 +chr11 4286016 T 0.6996 0.6997 0.6992 0.698 0.6996 +chr11 4288936 T 0.7039 0.704 0.7031 0.7012 0.7032 +chr11 4301371 G 0.6994 0.6997 0.699 0.6981 0.6996 +chr11 4310171 G 0.6997 0.6996 0.6991 0.6988 0.6995 +chr11 4330042 T 0.7035 0.7036 0.7021 0.7013 0.703 +chr11 4908477 T -0.2937 3.3684 -0.2934 -0.2937 -0.2934 +chr11 4941705 T -0.2991 3.3273 -0.3012 -0.2917 -0.3011 +chr11 4944016 A -0.2945 3.3274 -0.2946 -0.2944 -0.2946 +chr11 4945582 T -0.2945 3.3273 -0.2946 -0.2944 -0.2946 +chr11 4949541 A -0.2934 3.3271 -0.2941 -0.295 -0.294 +chr11 4971995 G -0.2948 3.3243 -0.295 -0.2959 -0.295 |