diff options
Diffstat (limited to 'e2e-tests/hsmice')
| -rw-r--r-- | e2e-tests/hsmice/check-qtl.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/e2e-tests/hsmice/check-qtl.py b/e2e-tests/hsmice/check-qtl.py index 6e342b1..f7dd739 100644 --- a/e2e-tests/hsmice/check-qtl.py +++ b/e2e-tests/hsmice/check-qtl.py @@ -20,9 +20,12 @@ import sys import pandas as pd +data_file = sys.argv[1] +query_expression = sys.argv[2] + if __name__ == "__main__": df = pd.read_csv(sys.argv[1], sep="\t") - qtl = df.query("p < 1e-10") + qtl = df.query(query_expression) # Assert that the QTL is on chromosome 4. assert (qtl.chromosome == 4).all() # Assert that the QTL is within 2 Mb of the expected position. |