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| author | Arun Isaac | 2025-09-02 21:28:01 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-09-02 22:32:03 +0100 |
| commit | 831f3da094834547fd9a2d357a8006c065a85289 (patch) | |
| tree | e010dca5180ca6162702cc8af271bf17d661dfad /tests/helpers | |
| parent | 7fd6a0ac1eccff5d772942b5de453309a967ca0b (diff) | |
| download | pyhegp-831f3da094834547fd9a2d357a8006c065a85289.tar.gz pyhegp-831f3da094834547fd9a2d357a8006c065a85289.tar.lz pyhegp-831f3da094834547fd9a2d357a8006c065a85289.zip | |
Add is_phenotype_metadata_column.
Promote phenotype_reserved_column_name_p from helpers.strategies to is_phenotype_metadata_column in pyhegp.serialization.
Diffstat (limited to 'tests/helpers')
| -rw-r--r-- | tests/helpers/strategies.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/tests/helpers/strategies.py b/tests/helpers/strategies.py index 416a914..de8239c 100644 --- a/tests/helpers/strategies.py +++ b/tests/helpers/strategies.py @@ -19,7 +19,7 @@ from hypothesis import strategies as st from hypothesis.extra.pandas import column, columns, data_frames -from pyhegp.serialization import Summary, is_genotype_metadata_column +from pyhegp.serialization import Summary, is_genotype_metadata_column, is_phenotype_metadata_column from pyhegp.utils import negate tabless_printable_ascii_text = st.text( @@ -71,11 +71,8 @@ def genotype_frames(draw): genotype.columns)), ignore_index=True) -def phenotype_reserved_column_name_p(name): - return name.lower() == "sample-id" - phenotype_names = st.lists(tabless_printable_ascii_text - .filter(negate(phenotype_reserved_column_name_p)), + .filter(negate(is_phenotype_metadata_column)), unique=True) @st.composite |