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| author | Arun Isaac | 2025-09-08 11:17:30 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-09-08 11:17:30 +0100 |
| commit | 97dce800d58b566ab9bf0c86d4f1633159982e93 (patch) | |
| tree | d8fa409eab74c06aa5c81774bafa17da0bdc7395 /e2e-tests | |
| parent | ad4541ea30ec4ba2487eae1f353ad392a751666d (diff) | |
| download | pyhegp-97dce800d58b566ab9bf0c86d4f1633159982e93.tar.gz pyhegp-97dce800d58b566ab9bf0c86d4f1633159982e93.tar.lz pyhegp-97dce800d58b566ab9bf0c86d4f1633159982e93.zip | |
Comment on QTL checking code.
Diffstat (limited to 'e2e-tests')
| -rw-r--r-- | e2e-tests/hsmice/check-qtl.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/e2e-tests/hsmice/check-qtl.py b/e2e-tests/hsmice/check-qtl.py index feae361..6e342b1 100644 --- a/e2e-tests/hsmice/check-qtl.py +++ b/e2e-tests/hsmice/check-qtl.py @@ -23,5 +23,7 @@ import pandas as pd if __name__ == "__main__": df = pd.read_csv(sys.argv[1], sep="\t") qtl = df.query("p < 1e-10") + # Assert that the QTL is on chromosome 4. assert (qtl.chromosome == 4).all() + # Assert that the QTL is within 2 Mb of the expected position. assert ((qtl.position - 137715608).abs() < 2*10**6).all() |